------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (Xarb30043004,((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((XarbpruniIVIA26261_P26104216,(XarbcorylinaCFBP1159_C15903104,XarbpruniCFBP3894_P89403718)m20)m18,XarbjuglandisCFBP2528_J52803556)m17,XarbjuglandisCPBF1521_J52103620)m16,XarbjuglandisNCPPB1447_J44703474)m15,XarbjuglandisCPBF427_J42702694)m14,XarbjuglandisXaj417_J41701947)m13,XarbjuglandisDW3F3_J3F303466)m12,XarbcorylinaNCCB100457_C45700939)m11,XarbjuglandisJ303_J30301639)m10,XarbjuglandisCFBP8253_J25303039)m9,XarbjuglandisCFBP7179_J17901210)m8,XarbcorylinaCFBP2565_C56503113)m7,XarbpopuliCFBP3122_P12203837)m6,XarbcelebensisNCPPB1630_C63002531)m5,((((((XarbzantedeschiaeCFBP7410_Z41001886,XarbfragariaeCFBP6773_F77301316)m41,Xarb30043004_X00402714)m40,(XarbfragariaeLMG19145_F14500238,(XarbfragariaeLMG19144_F14403010,XarbcelebensisNCPPB1832_C83202064)m47)m45)m39,XarbjuglandisCPBF426_J42600948)m38,(XarbfragariaeLMG19146_F14603568,XarbguizotiaeCFBP7408_G40803644)m51)m37,((XarbjuglandisCPBF367_J36703526,XarbpopuliCFBP3123_P12303739)m55,XgardineriSM40611_X61103433)m54)m36)m4,(XarbfragariaeCFBP6762_F76201413,XarbarracaciaeCFBP7407_A40703478)m59)m3,(XarbguizotiaeCFBP7408_G40804112,XarbguizotiaeCFBP7409_G40903986)m62)m2,XarbfragariaeLMG19146_F14603569)m1; Reconciliation: XarbpruniIVIA26261_P26104216: Leaf Node XarbcorylinaCFBP1159_C15903104: Leaf Node XarbpruniCFBP3894_P89403718: Leaf Node m20 = LCA[XarbcorylinaCFBP1159_C15903104, XarbpruniCFBP3894_P89403718]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbcorylinaCFBP1159 m18 = LCA[XarbpruniIVIA26261_P26104216, XarbpruniCFBP3894_P89403718]: Speciation, Mapping --> 100 XarbjuglandisCFBP2528_J52803556: Leaf Node m17 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisCFBP2528_J52803556]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP2528 XarbjuglandisCPBF1521_J52103620: Leaf Node m16 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisCPBF1521_J52103620]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisNCPPB1447_J44703474: Leaf Node m15 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisNCPPB1447_J44703474]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbjuglandisNCPPB1447 XarbjuglandisCPBF427_J42702694: Leaf Node m14 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisCPBF427_J42702694]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41701947: Leaf Node m13 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisXaj417_J41701947]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 XarbjuglandisDW3F3_J3F303466: Leaf Node m12 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisDW3F3_J3F303466]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 XarbcorylinaNCCB100457_C45700939: Leaf Node m11 = LCA[XarbpruniIVIA26261_P26104216, XarbcorylinaNCCB100457_C45700939]: Transfer, Mapping --> 100, Recipient --> XarbcorylinaNCCB100457 XarbjuglandisJ303_J30301639: Leaf Node m10 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisJ303_J30301639]: Speciation, Mapping --> 100 XarbjuglandisCFBP8253_J25303039: Leaf Node m9 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisCFBP8253_J25303039]: Speciation, Mapping --> 100 XarbjuglandisCFBP7179_J17901210: Leaf Node m8 = LCA[XarbpruniIVIA26261_P26104216, XarbjuglandisCFBP7179_J17901210]: Speciation, Mapping --> 100 XarbcorylinaCFBP2565_C56503113: Leaf Node m7 = LCA[XarbpruniIVIA26261_P26104216, XarbcorylinaCFBP2565_C56503113]: Transfer, Mapping --> 100, Recipient --> XarbcorylinaCFBP2565 XarbpopuliCFBP3122_P12203837: Leaf Node m6 = LCA[XarbpruniIVIA26261_P26104216, XarbpopuliCFBP3122_P12203837]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> 100 XarbcelebensisNCPPB1630_C63002531: Leaf Node m5 = LCA[XarbpruniIVIA26261_P26104216, XarbcelebensisNCPPB1630_C63002531]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbpopuliCFBP3122 XarbzantedeschiaeCFBP7410_Z41001886: Leaf Node XarbfragariaeCFBP6773_F77301316: Leaf Node m41 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, XarbfragariaeCFBP6773_F77301316]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> XarbzantedeschiaeCFBP7410 Xarb30043004_X00402714: Leaf Node m40 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, Xarb30043004_X00402714]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19145_F14500238: Leaf Node XarbfragariaeLMG19144_F14403010: Leaf Node XarbcelebensisNCPPB1832_C83202064: Leaf Node m47 = LCA[XarbfragariaeLMG19144_F14403010, XarbcelebensisNCPPB1832_C83202064]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19144 m45 = LCA[XarbfragariaeLMG19145_F14500238, XarbcelebensisNCPPB1832_C83202064]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19145 m39 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, XarbcelebensisNCPPB1832_C83202064]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> Xarb30043004 XarbjuglandisCPBF426_J42600948: Leaf Node m38 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, XarbjuglandisCPBF426_J42600948]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbjuglandisCPBF426 XarbfragariaeLMG19146_F14603568: Leaf Node XarbguizotiaeCFBP7408_G40803644: Leaf Node m51 = LCA[XarbfragariaeLMG19146_F14603568, XarbguizotiaeCFBP7408_G40803644]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbguizotiaeCFBP7408 m37 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, XarbguizotiaeCFBP7408_G40803644]: Speciation, Mapping --> 100 XarbjuglandisCPBF367_J36703526: Leaf Node XarbpopuliCFBP3123_P12303739: Leaf Node m55 = LCA[XarbjuglandisCPBF367_J36703526, XarbpopuliCFBP3123_P12303739]: Transfer, Mapping --> 100, Recipient --> XarbpopuliCFBP3123 XgardineriSM40611_X61103433: Leaf Node m54 = LCA[XarbjuglandisCPBF367_J36703526, XgardineriSM40611_X61103433]: Speciation, Mapping --> 78 m36 = LCA[XarbzantedeschiaeCFBP7410_Z41001886, XgardineriSM40611_X61103433]: Transfer, Mapping --> 100, Recipient --> 78 m4 = LCA[XarbpruniIVIA26261_P26104216, XgardineriSM40611_X61103433]: Speciation, Mapping --> 100 XarbfragariaeCFBP6762_F76201413: Leaf Node XarbarracaciaeCFBP7407_A40703478: Leaf Node m59 = LCA[XarbfragariaeCFBP6762_F76201413, XarbarracaciaeCFBP7407_A40703478]: Speciation, Mapping --> 25 m3 = LCA[XarbpruniIVIA26261_P26104216, XarbarracaciaeCFBP7407_A40703478]: Speciation, Mapping --> 25 XarbguizotiaeCFBP7408_G40804112: Leaf Node XarbguizotiaeCFBP7409_G40903986: Leaf Node m62 = LCA[XarbguizotiaeCFBP7408_G40804112, XarbguizotiaeCFBP7409_G40903986]: Speciation, Mapping --> 100 m2 = LCA[XarbpruniIVIA26261_P26104216, XarbguizotiaeCFBP7409_G40903986]: Transfer, Mapping --> 100, Recipient --> 25 XarbfragariaeLMG19146_F14603569: Leaf Node m1 = LCA[XarbpruniIVIA26261_P26104216, XarbfragariaeLMG19146_F14603569]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100 The minimum reconciliation cost is: 69 (Duplications: 0, Transfers: 21, Losses: 6) Total number of optimal solutions: 256 Total number of candidates for gene birth: 2