------------ Reconciliation for Gene Tree 1 (rooted) -------------
Species Tree: 
((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1;

Gene Tree: 
((((((((((((((((XarbjuglandisCPBF1521_J52102057,XarbjuglandisCFBP2528_J52801819)m16,XarbjuglandisCFBP7179_J17900445)m15,XarbjuglandisNCPPB1447_J44702956)m14,XarbjuglandisCPBF427_J42700846)m13,XarbjuglandisCFBP8253_J25300901)m12,XarbjuglandisDW3F3_J3F301382)m11,XarbjuglandisJ303_J30300222)m10,XarbzantedeschiaeCFBP7410_Z41004046)m9,XarbjuglandisCPBF367_J36700790)m8,XarbjuglandisCPBF426_J42603598)m7,XarbarracaciaeCFBP7407_A40702746)m6,(XarbfragariaeCFBP6762_F76202888,XarbfragariaeLMG19146_F14600495)m29)m5,(((Xarb30043004_X00400346,XarbfragariaeLMG19145_F14501856)m34,XgardineriSM40611_X61100498)m33,(XarbguizotiaeCFBP7408_G40803883,XarbguizotiaeCFBP7409_G40903756)m38)m32)m4,XarbjuglandisXaj417_J41701638)m3,((XarbpopuliCFBP3123_P12301183,XarbpopuliCFBP3122_P12201759)m43,((((XarbpruniIVIA26261_P26100636,XarbpruniCFBP3894_P89404136)m49,((XarbcorylinaCFBP2565_C56500514,XarbcorylinaCFBP1159_C15903744)m53,XarbcorylinaNCCB100457_C45703565)m52)m48,(XarbfragariaeLMG19144_F14402385,XarbcelebensisNCPPB1832_C83203815)m57)m47,XarbfragariaeCFBP6773_F77300877)m46)m42)m2,XarbcelebensisNCPPB1630_C63003501)m1;

Reconciliation:
XarbjuglandisCPBF1521_J52102057: Leaf Node
XarbjuglandisCFBP2528_J52801819: Leaf Node
m16 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCFBP2528_J52801819]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCPBF1521
XarbjuglandisCFBP7179_J17900445: Leaf Node
m15 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCFBP7179_J17900445]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCFBP7179
XarbjuglandisNCPPB1447_J44702956: Leaf Node
m14 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisNCPPB1447_J44702956]: Speciation, Mapping --> 100
XarbjuglandisCPBF427_J42700846: Leaf Node
m13 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCPBF427_J42700846]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF427
XarbjuglandisCFBP8253_J25300901: Leaf Node
m12 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCFBP8253_J25300901]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP8253
XarbjuglandisDW3F3_J3F301382: Leaf Node
m11 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisDW3F3_J3F301382]: Speciation, Mapping --> 100
XarbjuglandisJ303_J30300222: Leaf Node
m10 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisJ303_J30300222]: Speciation, Mapping --> 100
XarbzantedeschiaeCFBP7410_Z41004046: Leaf Node
m9 = LCA[XarbjuglandisCPBF1521_J52102057, XarbzantedeschiaeCFBP7410_Z41004046]: Speciation, Mapping --> 25
XarbjuglandisCPBF367_J36700790: Leaf Node
m8 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCPBF367_J36700790]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> 25
XarbjuglandisCPBF426_J42603598: Leaf Node
m7 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisCPBF426_J42603598]: Speciation, Mapping --> 100
XarbarracaciaeCFBP7407_A40702746: Leaf Node
m6 = LCA[XarbjuglandisCPBF1521_J52102057, XarbarracaciaeCFBP7407_A40702746]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> 100
XarbfragariaeCFBP6762_F76202888: Leaf Node
XarbfragariaeLMG19146_F14600495: Leaf Node
m29 = LCA[XarbfragariaeCFBP6762_F76202888, XarbfragariaeLMG19146_F14600495]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeCFBP6762
m5 = LCA[XarbjuglandisCPBF1521_J52102057, XarbfragariaeLMG19146_F14600495]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbarracaciaeCFBP7407
Xarb30043004_X00400346: Leaf Node
XarbfragariaeLMG19145_F14501856: Leaf Node
m34 = LCA[Xarb30043004_X00400346, XarbfragariaeLMG19145_F14501856]: Speciation, Mapping --> n2
XgardineriSM40611_X61100498: Leaf Node
m33 = LCA[Xarb30043004_X00400346, XgardineriSM40611_X61100498]: Transfer, Mapping --> 100, Recipient --> n2
XarbguizotiaeCFBP7408_G40803883: Leaf Node
XarbguizotiaeCFBP7409_G40903756: Leaf Node
m38 = LCA[XarbguizotiaeCFBP7408_G40803883, XarbguizotiaeCFBP7409_G40903756]: Speciation, Mapping --> 100
m32 = LCA[Xarb30043004_X00400346, XarbguizotiaeCFBP7409_G40903756]: Speciation, Mapping --> 100
m4 = LCA[XarbjuglandisCPBF1521_J52102057, XarbguizotiaeCFBP7409_G40903756]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100
XarbjuglandisXaj417_J41701638: Leaf Node
m3 = LCA[XarbjuglandisCPBF1521_J52102057, XarbjuglandisXaj417_J41701638]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbjuglandisXaj417
XarbpopuliCFBP3123_P12301183: Leaf Node
XarbpopuliCFBP3122_P12201759: Leaf Node
m43 = LCA[XarbpopuliCFBP3123_P12301183, XarbpopuliCFBP3122_P12201759]: Speciation, Mapping --> 100
XarbpruniIVIA26261_P26100636: Leaf Node
XarbpruniCFBP3894_P89404136: Leaf Node
m49 = LCA[XarbpruniIVIA26261_P26100636, XarbpruniCFBP3894_P89404136]: Speciation, Mapping --> 100
XarbcorylinaCFBP2565_C56500514: Leaf Node
XarbcorylinaCFBP1159_C15903744: Leaf Node
m53 = LCA[XarbcorylinaCFBP2565_C56500514, XarbcorylinaCFBP1159_C15903744]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> XarbcorylinaCFBP1159
XarbcorylinaNCCB100457_C45703565: Leaf Node
m52 = LCA[XarbcorylinaCFBP2565_C56500514, XarbcorylinaNCCB100457_C45703565]: Speciation, Mapping --> 100
m48 = LCA[XarbpruniIVIA26261_P26100636, XarbcorylinaNCCB100457_C45703565]: Speciation, Mapping --> 100
XarbfragariaeLMG19144_F14402385: Leaf Node
XarbcelebensisNCPPB1832_C83203815: Leaf Node
m57 = LCA[XarbfragariaeLMG19144_F14402385, XarbcelebensisNCPPB1832_C83203815]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19144
m47 = LCA[XarbpruniIVIA26261_P26100636, XarbcelebensisNCPPB1832_C83203815]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> 100
XarbfragariaeCFBP6773_F77300877: Leaf Node
m46 = LCA[XarbpruniIVIA26261_P26100636, XarbfragariaeCFBP6773_F77300877]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeCFBP6773
m42 = LCA[XarbpopuliCFBP3123_P12301183, XarbfragariaeCFBP6773_F77300877]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> 100
m2 = LCA[XarbjuglandisCPBF1521_J52102057, XarbfragariaeCFBP6773_F77300877]: Speciation, Mapping --> 100
XarbcelebensisNCPPB1630_C63003501: Leaf Node
m1 = LCA[XarbjuglandisCPBF1521_J52102057, XarbcelebensisNCPPB1630_C63003501]: Speciation, Mapping --> 100

The minimum reconciliation cost is: 57 (Duplications: 0, Transfers: 16, Losses: 9)
Total number of optimal solutions: 240
Total number of candidates for gene birth: 1