------------ Reconciliation for Gene Tree 1 (rooted) -------------
Species Tree: 
((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1;

Gene Tree: 
((((((((((((((((((((XarbguizotiaeCFBP7409_G40900273,XarbguizotiaeCFBP7408_G40800561)m20,XarbfragariaeCFBP6773_F77301566)m19,Xarb30043004_X00403083)m18,XarbfragariaeLMG19145_F14503199)m17,XarbfragariaeLMG19144_F14400483)m16,XarbpopuliCFBP3122_P12203185)m15,((((((XarbjuglandisCFBP8253_J25301116,((XarbjuglandisJ303_J30302654,XarbjuglandisCPBF1521_J52102975)m36,XarbjuglandisCPBF427_J42702380)m35)m33,XarbcorylinaCFBP2565_C56500852)m32,XarbcorylinaNCCB100457_C45703267)m31,XarbcorylinaCFBP1159_C15901404)m30,XarbpopuliCFBP3123_P12302721)m29,((XarbjuglandisCPBF367_J36700902,XarbjuglandisCPBF426_J42601308)m45,XgardineriSM40611_X61102153)m44)m28)m14,XarbarracaciaeCFBP7407_A40702683)m13,XarbcelebensisNCPPB1630_C63001181)m12,XarbcelebensisNCPPB1832_C83200712)m11,XarbfragariaeLMG19146_F14601894)m10,XarbfragariaeCFBP6762_F76200033)m9,XarbjuglandisCFBP7179_J17901759)m8,XarbjuglandisDW3F3_J3F302466)m7,XarbjuglandisXaj417_J41702884)m6,XarbjuglandisNCPPB1447_J44701726)m5,XarbjuglandisCFBP2528_J52802225)m4,XarbpruniIVIA26261_P26102666)m3,XarbpruniCFBP3894_P89401970)m2,XarbzantedeschiaeCFBP7410_Z41002481)m1;

Reconciliation:
XarbguizotiaeCFBP7409_G40900273: Leaf Node
XarbguizotiaeCFBP7408_G40800561: Leaf Node
m20 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbguizotiaeCFBP7408_G40800561]: Speciation, Mapping --> 100
XarbfragariaeCFBP6773_F77301566: Leaf Node
m19 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbfragariaeCFBP6773_F77301566]: Speciation, Mapping --> 56
Xarb30043004_X00403083: Leaf Node
m18 = LCA[XarbguizotiaeCFBP7409_G40900273, Xarb30043004_X00403083]: Transfer, Mapping --> Xarb30043004, Recipient --> 56
XarbfragariaeLMG19145_F14503199: Leaf Node
m17 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbfragariaeLMG19145_F14503199]: Speciation, Mapping --> n2
XarbfragariaeLMG19144_F14400483: Leaf Node
m16 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbfragariaeLMG19144_F14400483]: Transfer, Mapping --> n2, Recipient --> XarbfragariaeLMG19144
XarbpopuliCFBP3122_P12203185: Leaf Node
m15 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbpopuliCFBP3122_P12203185]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> n2
XarbjuglandisCFBP8253_J25301116: Leaf Node
XarbjuglandisJ303_J30302654: Leaf Node
XarbjuglandisCPBF1521_J52102975: Leaf Node
m36 = LCA[XarbjuglandisJ303_J30302654, XarbjuglandisCPBF1521_J52102975]: Transfer, Mapping --> XarbjuglandisJ303, Recipient --> XarbjuglandisCPBF1521
XarbjuglandisCPBF427_J42702380: Leaf Node
m35 = LCA[XarbjuglandisJ303_J30302654, XarbjuglandisCPBF427_J42702380]: Speciation, Mapping --> 100
m33 = LCA[XarbjuglandisCFBP8253_J25301116, XarbjuglandisCPBF427_J42702380]: Speciation, Mapping --> 100
XarbcorylinaCFBP2565_C56500852: Leaf Node
m32 = LCA[XarbjuglandisCFBP8253_J25301116, XarbcorylinaCFBP2565_C56500852]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> 100
XarbcorylinaNCCB100457_C45703267: Leaf Node
m31 = LCA[XarbjuglandisCFBP8253_J25301116, XarbcorylinaNCCB100457_C45703267]: Speciation, Mapping --> 100
XarbcorylinaCFBP1159_C15901404: Leaf Node
m30 = LCA[XarbjuglandisCFBP8253_J25301116, XarbcorylinaCFBP1159_C15901404]: Speciation, Mapping --> 100
XarbpopuliCFBP3123_P12302721: Leaf Node
m29 = LCA[XarbjuglandisCFBP8253_J25301116, XarbpopuliCFBP3123_P12302721]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> 100
XarbjuglandisCPBF367_J36700902: Leaf Node
XarbjuglandisCPBF426_J42601308: Leaf Node
m45 = LCA[XarbjuglandisCPBF367_J36700902, XarbjuglandisCPBF426_J42601308]: Speciation, Mapping --> 100
XgardineriSM40611_X61102153: Leaf Node
m44 = LCA[XarbjuglandisCPBF367_J36700902, XgardineriSM40611_X61102153]: Speciation, Mapping --> 78
m28 = LCA[XarbjuglandisCFBP8253_J25301116, XgardineriSM40611_X61102153]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> 78
m14 = LCA[XarbguizotiaeCFBP7409_G40900273, XgardineriSM40611_X61102153]: Speciation, Mapping --> 100
XarbarracaciaeCFBP7407_A40702683: Leaf Node
m13 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbarracaciaeCFBP7407_A40702683]: Transfer, Mapping --> 100, Recipient --> XarbarracaciaeCFBP7407
XarbcelebensisNCPPB1630_C63001181: Leaf Node
m12 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbcelebensisNCPPB1630_C63001181]: Transfer, Mapping --> 100, Recipient --> XarbcelebensisNCPPB1630
XarbcelebensisNCPPB1832_C83200712: Leaf Node
m11 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbcelebensisNCPPB1832_C83200712]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> 100
XarbfragariaeLMG19146_F14601894: Leaf Node
m10 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbfragariaeLMG19146_F14601894]: Speciation, Mapping --> 100
XarbfragariaeCFBP6762_F76200033: Leaf Node
m9 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbfragariaeCFBP6762_F76200033]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> 100
XarbjuglandisCFBP7179_J17901759: Leaf Node
m8 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbjuglandisCFBP7179_J17901759]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6762
XarbjuglandisDW3F3_J3F302466: Leaf Node
m7 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbjuglandisDW3F3_J3F302466]: Speciation, Mapping --> 100
XarbjuglandisXaj417_J41702884: Leaf Node
m6 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbjuglandisXaj417_J41702884]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> 100
XarbjuglandisNCPPB1447_J44701726: Leaf Node
m5 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbjuglandisNCPPB1447_J44701726]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbjuglandisXaj417
XarbjuglandisCFBP2528_J52802225: Leaf Node
m4 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbjuglandisCFBP2528_J52802225]: Speciation, Mapping --> 100
XarbpruniIVIA26261_P26102666: Leaf Node
m3 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbpruniIVIA26261_P26102666]: Transfer, Mapping --> XarbpruniIVIA26261, Recipient --> 100
XarbpruniCFBP3894_P89401970: Leaf Node
m2 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbpruniCFBP3894_P89401970]: Speciation, Mapping --> 100
XarbzantedeschiaeCFBP7410_Z41002481: Leaf Node
m1 = LCA[XarbguizotiaeCFBP7409_G40900273, XarbzantedeschiaeCFBP7410_Z41002481]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> 100

The minimum reconciliation cost is: 53 (Duplications: 0, Transfers: 16, Losses: 5)
Total number of optimal solutions: 128
Total number of candidates for gene birth: 2