------------ Reconciliation for Gene Tree 1 (rooted) -------------
Species Tree: 
(XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1;

Gene Tree: 
(((((((((((((((((((((((((((XarbjuglandisCPBF367_J36700251,XarbjuglandisCPBF426_J42601049)m27,XarbpopuliCFBP3123_P12303443)m26,XarbpopuliCFBP3122_P12203286)m25,XgardineriSM40611_X61100107)m24,XarbarracaciaeCFBP7407_A40704116)m23,XarbzantedeschiaeCFBP7410_Z41001531)m22,XarbfragariaeLMG19145_F14502451)m21,Xarb30043004_X00403044)m20,(XarbfragariaeLMG19146_F14602422,XarbfragariaeCFBP6762_F76202612)m37)m19,(XarbfragariaeLMG19144_F14401058,XarbfragariaeCFBP6773_F77301919)m40)m18,(XarbcelebensisNCPPB1630_C63000529,XarbcelebensisNCPPB1832_C83203186)m43)m17,XarbcorylinaCFBP1159_C15901054)m16,XarbcorylinaNCCB100457_C45701036)m15,XarbcorylinaCFBP2565_C56503399)m14,XarbjuglandisCFBP7179_J17902643)m13,XarbjuglandisCFBP8253_J25303561)m12,XarbjuglandisJ303_J30303467)m11,XarbjuglandisDW3F3_J3F301984)m10,XarbjuglandisXaj417_J41703976)m9,XarbjuglandisCPBF427_J42700659)m8,XarbjuglandisNCPPB1447_J44703975)m7,XarbjuglandisCPBF1521_J52100827)m6,XarbjuglandisCFBP2528_J52801233)m5,(XarbguizotiaeCFBP7409_G40902583,XarbguizotiaeCFBP7408_G40803166)m58)m4,XarbpruniCFBP3894_P89401757)m3,XarbpruniIVIA26261_P26101530)m2,XarbpruniIVIA26261_P26101529)m1;

Reconciliation:
XarbjuglandisCPBF367_J36700251: Leaf Node
XarbjuglandisCPBF426_J42601049: Leaf Node
m27 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCPBF426_J42601049]: Speciation, Mapping --> 100
XarbpopuliCFBP3123_P12303443: Leaf Node
m26 = LCA[XarbjuglandisCPBF367_J36700251, XarbpopuliCFBP3123_P12303443]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> 100
XarbpopuliCFBP3122_P12203286: Leaf Node
m25 = LCA[XarbjuglandisCPBF367_J36700251, XarbpopuliCFBP3122_P12203286]: Speciation, Mapping --> 100
XgardineriSM40611_X61100107: Leaf Node
m24 = LCA[XarbjuglandisCPBF367_J36700251, XgardineriSM40611_X61100107]: Speciation, Mapping --> 100
XarbarracaciaeCFBP7407_A40704116: Leaf Node
m23 = LCA[XarbjuglandisCPBF367_J36700251, XarbarracaciaeCFBP7407_A40704116]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> 100
XarbzantedeschiaeCFBP7410_Z41001531: Leaf Node
m22 = LCA[XarbjuglandisCPBF367_J36700251, XarbzantedeschiaeCFBP7410_Z41001531]: Speciation, Mapping --> 25
XarbfragariaeLMG19145_F14502451: Leaf Node
m21 = LCA[XarbjuglandisCPBF367_J36700251, XarbfragariaeLMG19145_F14502451]: Transfer, Mapping --> 25, Recipient --> XarbfragariaeLMG19145
Xarb30043004_X00403044: Leaf Node
m20 = LCA[XarbjuglandisCPBF367_J36700251, Xarb30043004_X00403044]: Transfer, Mapping --> 25, Recipient --> Xarb30043004
XarbfragariaeLMG19146_F14602422: Leaf Node
XarbfragariaeCFBP6762_F76202612: Leaf Node
m37 = LCA[XarbfragariaeLMG19146_F14602422, XarbfragariaeCFBP6762_F76202612]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbfragariaeLMG19146
m19 = LCA[XarbjuglandisCPBF367_J36700251, XarbfragariaeCFBP6762_F76202612]: Speciation, Mapping --> 25
XarbfragariaeLMG19144_F14401058: Leaf Node
XarbfragariaeCFBP6773_F77301919: Leaf Node
m40 = LCA[XarbfragariaeLMG19144_F14401058, XarbfragariaeCFBP6773_F77301919]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> XarbfragariaeLMG19144
m18 = LCA[XarbjuglandisCPBF367_J36700251, XarbfragariaeCFBP6773_F77301919]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> 25
XarbcelebensisNCPPB1630_C63000529: Leaf Node
XarbcelebensisNCPPB1832_C83203186: Leaf Node
m43 = LCA[XarbcelebensisNCPPB1630_C63000529, XarbcelebensisNCPPB1832_C83203186]: Speciation, Mapping --> 100
m17 = LCA[XarbjuglandisCPBF367_J36700251, XarbcelebensisNCPPB1832_C83203186]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> 100
XarbcorylinaCFBP1159_C15901054: Leaf Node
m16 = LCA[XarbjuglandisCPBF367_J36700251, XarbcorylinaCFBP1159_C15901054]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XarbfragariaeCFBP6773
XarbcorylinaNCCB100457_C45701036: Leaf Node
m15 = LCA[XarbjuglandisCPBF367_J36700251, XarbcorylinaNCCB100457_C45701036]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcorylinaCFBP1159
XarbcorylinaCFBP2565_C56503399: Leaf Node
m14 = LCA[XarbjuglandisCPBF367_J36700251, XarbcorylinaCFBP2565_C56503399]: Speciation, Mapping --> 100
XarbjuglandisCFBP7179_J17902643: Leaf Node
m13 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCFBP7179_J17902643]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP7179
XarbjuglandisCFBP8253_J25303561: Leaf Node
m12 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCFBP8253_J25303561]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> 100
XarbjuglandisJ303_J30303467: Leaf Node
m11 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisJ303_J30303467]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisJ303
XarbjuglandisDW3F3_J3F301984: Leaf Node
m10 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisDW3F3_J3F301984]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisDW3F3
XarbjuglandisXaj417_J41703976: Leaf Node
m9 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisXaj417_J41703976]: Speciation, Mapping --> 98
XarbjuglandisCPBF427_J42700659: Leaf Node
m8 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCPBF427_J42700659]: Speciation, Mapping --> 100
XarbjuglandisNCPPB1447_J44703975: Leaf Node
m7 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisNCPPB1447_J44703975]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> 100
XarbjuglandisCPBF1521_J52100827: Leaf Node
m6 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCPBF1521_J52100827]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbjuglandisCPBF1521
XarbjuglandisCFBP2528_J52801233: Leaf Node
m5 = LCA[XarbjuglandisCPBF367_J36700251, XarbjuglandisCFBP2528_J52801233]: Speciation, Mapping --> 100
XarbguizotiaeCFBP7409_G40902583: Leaf Node
XarbguizotiaeCFBP7408_G40803166: Leaf Node
m58 = LCA[XarbguizotiaeCFBP7409_G40902583, XarbguizotiaeCFBP7408_G40803166]: Speciation, Mapping --> 100
m4 = LCA[XarbjuglandisCPBF367_J36700251, XarbguizotiaeCFBP7408_G40803166]: Transfer, Mapping --> 100, Recipient --> 100
XarbpruniCFBP3894_P89401757: Leaf Node
m3 = LCA[XarbjuglandisCPBF367_J36700251, XarbpruniCFBP3894_P89401757]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> 100
XarbpruniIVIA26261_P26101530: Leaf Node
m2 = LCA[XarbjuglandisCPBF367_J36700251, XarbpruniIVIA26261_P26101530]: Speciation, Mapping --> 100
XarbpruniIVIA26261_P26101529: Leaf Node
m1 = LCA[XarbjuglandisCPBF367_J36700251, XarbpruniIVIA26261_P26101529]: Duplication, Mapping --> 100

The minimum reconciliation cost is: 62 (Duplications: 1, Transfers: 18, Losses: 6)
Total number of optimal solutions: 384
Total number of candidates for gene birth: 1