------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((((((((((XarbpruniIVIA26261_P26101492,(Xarb30043004_X00401932,XarbpopuliCFBP3122_P12203253)m28)m26,XarbjuglandisCPBF427_J42700623)m25,XarbjuglandisDW3F3_J3F302020)m24,XarbjuglandisCFBP8253_J25302616)m23,XarbguizotiaeCFBP7408_G40803192)m22,XarbfragariaeLMG19145_F14502488)m21,XarbcelebensisNCPPB1832_C83203227)m20,XarbfragariaeCFBP6762_F76202564)m19,XarbcorylinaCFBP2565_C56503433)m18,XarbcorylinaCFBP1159_C15901018)m17,((XarbjuglandisNCPPB1447_J44700936,XarbjuglandisCFBP2528_J52801197)m41,XarbjuglandisCFBP7179_J17902679)m40)m16,(XarbpopuliCFBP3123_P12303476,XarbjuglandisCPBF367_J36700218)m45)m15,XarbfragariaeLMG19146_F14602471)m14,XarbarracaciaeCFBP7407_A40702410)m13,XarbcorylinaNCCB100457_C45700364)m12,XarbcelebensisNCPPB1630_C63000574)m11,XarbfragariaeLMG19144_F14400598)m10,XarbfragariaeCFBP6773_F77301950)m9,XarbguizotiaeCFBP7409_G40902557)m8,XarbjuglandisJ303_J30303503)m7,XarbjuglandisXaj417_J41703902)m6,XarbjuglandisCPBF1521_J52100791)m5,XarbpruniCFBP3894_P89401721)m4,XarbzantedeschiaeCFBP7410_Z41004054)m3,XgardineriSM40611_X61102232)m2,XarbjuglandisCPBF426_J42601016)m1; Reconciliation: XarbpruniIVIA26261_P26101492: Leaf Node Xarb30043004_X00401932: Leaf Node XarbpopuliCFBP3122_P12203253: Leaf Node m28 = LCA[Xarb30043004_X00401932, XarbpopuliCFBP3122_P12203253]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbpopuliCFBP3122 m26 = LCA[XarbpruniIVIA26261_P26101492, XarbpopuliCFBP3122_P12203253]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbpruniIVIA26261 XarbjuglandisCPBF427_J42700623: Leaf Node m25 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCPBF427_J42700623]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisCPBF427 XarbjuglandisDW3F3_J3F302020: Leaf Node m24 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisDW3F3_J3F302020]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisDW3F3 XarbjuglandisCFBP8253_J25302616: Leaf Node m23 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCFBP8253_J25302616]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisCFBP8253 XarbguizotiaeCFBP7408_G40803192: Leaf Node m22 = LCA[XarbpruniIVIA26261_P26101492, XarbguizotiaeCFBP7408_G40803192]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbguizotiaeCFBP7408 XarbfragariaeLMG19145_F14502488: Leaf Node m21 = LCA[XarbpruniIVIA26261_P26101492, XarbfragariaeLMG19145_F14502488]: Speciation, Mapping --> n2 XarbcelebensisNCPPB1832_C83203227: Leaf Node m20 = LCA[XarbpruniIVIA26261_P26101492, XarbcelebensisNCPPB1832_C83203227]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> n2 XarbfragariaeCFBP6762_F76202564: Leaf Node m19 = LCA[XarbpruniIVIA26261_P26101492, XarbfragariaeCFBP6762_F76202564]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeCFBP6762 XarbcorylinaCFBP2565_C56503433: Leaf Node m18 = LCA[XarbpruniIVIA26261_P26101492, XarbcorylinaCFBP2565_C56503433]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbcorylinaCFBP2565 XarbcorylinaCFBP1159_C15901018: Leaf Node m17 = LCA[XarbpruniIVIA26261_P26101492, XarbcorylinaCFBP1159_C15901018]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbcorylinaCFBP1159 XarbjuglandisNCPPB1447_J44700936: Leaf Node XarbjuglandisCFBP2528_J52801197: Leaf Node m41 = LCA[XarbjuglandisNCPPB1447_J44700936, XarbjuglandisCFBP2528_J52801197]: Speciation, Mapping --> 100 XarbjuglandisCFBP7179_J17902679: Leaf Node m40 = LCA[XarbjuglandisNCPPB1447_J44700936, XarbjuglandisCFBP7179_J17902679]: Speciation, Mapping --> 100 m16 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCFBP7179_J17902679]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> 100 XarbpopuliCFBP3123_P12303476: Leaf Node XarbjuglandisCPBF367_J36700218: Leaf Node m45 = LCA[XarbpopuliCFBP3123_P12303476, XarbjuglandisCPBF367_J36700218]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbpopuliCFBP3123 m15 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCPBF367_J36700218]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbjuglandisCPBF367 XarbfragariaeLMG19146_F14602471: Leaf Node m14 = LCA[XarbpruniIVIA26261_P26101492, XarbfragariaeLMG19146_F14602471]: Speciation, Mapping --> 100 XarbarracaciaeCFBP7407_A40702410: Leaf Node m13 = LCA[XarbpruniIVIA26261_P26101492, XarbarracaciaeCFBP7407_A40702410]: Transfer, Mapping --> 100, Recipient --> XarbarracaciaeCFBP7407 XarbcorylinaNCCB100457_C45700364: Leaf Node m12 = LCA[XarbpruniIVIA26261_P26101492, XarbcorylinaNCCB100457_C45700364]: Transfer, Mapping --> 100, Recipient --> XarbcorylinaNCCB100457 XarbcelebensisNCPPB1630_C63000574: Leaf Node m11 = LCA[XarbpruniIVIA26261_P26101492, XarbcelebensisNCPPB1630_C63000574]: Speciation, Mapping --> 100 XarbfragariaeLMG19144_F14400598: Leaf Node m10 = LCA[XarbpruniIVIA26261_P26101492, XarbfragariaeLMG19144_F14400598]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144 XarbfragariaeCFBP6773_F77301950: Leaf Node m9 = LCA[XarbpruniIVIA26261_P26101492, XarbfragariaeCFBP6773_F77301950]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6773 XarbguizotiaeCFBP7409_G40902557: Leaf Node m8 = LCA[XarbpruniIVIA26261_P26101492, XarbguizotiaeCFBP7409_G40902557]: Transfer, Mapping --> XarbguizotiaeCFBP7409, Recipient --> 100 XarbjuglandisJ303_J30303503: Leaf Node m7 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisJ303_J30303503]: Transfer, Mapping --> XarbjuglandisJ303, Recipient --> XarbguizotiaeCFBP7409 XarbjuglandisXaj417_J41703902: Leaf Node m6 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisXaj417_J41703902]: Transfer, Mapping --> XarbjuglandisJ303, Recipient --> XarbjuglandisXaj417 XarbjuglandisCPBF1521_J52100791: Leaf Node m5 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCPBF1521_J52100791]: Speciation, Mapping --> 100 XarbpruniCFBP3894_P89401721: Leaf Node m4 = LCA[XarbpruniIVIA26261_P26101492, XarbpruniCFBP3894_P89401721]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> 100 XarbzantedeschiaeCFBP7410_Z41004054: Leaf Node m3 = LCA[XarbpruniIVIA26261_P26101492, XarbzantedeschiaeCFBP7410_Z41004054]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbzantedeschiaeCFBP7410 XgardineriSM40611_X61102232: Leaf Node m2 = LCA[XarbpruniIVIA26261_P26101492, XgardineriSM40611_X61102232]: Transfer, Mapping --> XgardineriSM40611, Recipient --> XarbpruniCFBP3894 XarbjuglandisCPBF426_J42601016: Leaf Node m1 = LCA[XarbpruniIVIA26261_P26101492, XarbjuglandisCPBF426_J42601016]: Speciation, Mapping --> 78 The minimum reconciliation cost is: 71 (Duplications: 0, Transfers: 23, Losses: 2) Total number of optimal solutions: 120 Total number of candidates for gene birth: 1