------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: (((((((((((((((((Xarb30043004_X00401832,XgardineriSM40611_X61103837)m17,XarbpruniIVIA26261_P26100425)m16,XarbpopuliCFBP3122_P12202283)m15,XarbjuglandisCPBF1521_J52103794)m14,XarbjuglandisCPBF427_J42703881)m13,XarbjuglandisXaj417_J41704261)m12,XarbjuglandisCPBF367_J36702514)m11,XarbjuglandisCFBP8253_J25302333)m10,XarbguizotiaeCFBP7409_G40901624)m9,XarbfragariaeCFBP6773_F77300180)m8,XarbfragariaeLMG19146_F14600169)m7,XarbfragariaeLMG19144_F14400686)m6,XarbcelebensisNCPPB1630_C63002353)m5,XarbcorylinaCFBP1159_C15902446)m4,XarbcorylinaCFBP2565_C56501901)m3,(((((XarbjuglandisJ303_J30301336,((XarbjuglandisCPBF426_J42600081,(((((XarbpruniCFBP3894_P89401318,(XarbzantedeschiaeCFBP7410_Z41003549,XarbcorylinaNCCB100457_C45701538)m49)m47,XarbpopuliCFBP3123_P12303052)m46,XarbarracaciaeCFBP7407_A40702308)m45,XarbjuglandisCFBP2528_J52804102)m44,XarbjuglandisNCPPB1447_J44703611)m43)m41,XarbjuglandisDW3F3_J3F303658)m40)m38,XarbjuglandisCFBP7179_J17903051)m37,XarbguizotiaeCFBP7408_G40802477)m36,XarbfragariaeCFBP6762_F76203715)m35,XarbfragariaeLMG19145_F14500419)m34)m2,XarbcelebensisNCPPB1832_C83200188)m1; Reconciliation: Xarb30043004_X00401832: Leaf Node XgardineriSM40611_X61103837: Leaf Node m17 = LCA[Xarb30043004_X00401832, XgardineriSM40611_X61103837]: Transfer, Mapping --> XgardineriSM40611, Recipient --> Xarb30043004 XarbpruniIVIA26261_P26100425: Leaf Node m16 = LCA[Xarb30043004_X00401832, XarbpruniIVIA26261_P26100425]: Transfer, Mapping --> 78, Recipient --> XarbpruniIVIA26261 XarbpopuliCFBP3122_P12202283: Leaf Node m15 = LCA[Xarb30043004_X00401832, XarbpopuliCFBP3122_P12202283]: Speciation, Mapping --> 100 XarbjuglandisCPBF1521_J52103794: Leaf Node m14 = LCA[Xarb30043004_X00401832, XarbjuglandisCPBF1521_J52103794]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisCPBF427_J42703881: Leaf Node m13 = LCA[Xarb30043004_X00401832, XarbjuglandisCPBF427_J42703881]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41704261: Leaf Node m12 = LCA[Xarb30043004_X00401832, XarbjuglandisXaj417_J41704261]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> 100 XarbjuglandisCPBF367_J36702514: Leaf Node m11 = LCA[Xarb30043004_X00401832, XarbjuglandisCPBF367_J36702514]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCPBF367 XarbjuglandisCFBP8253_J25302333: Leaf Node m10 = LCA[Xarb30043004_X00401832, XarbjuglandisCFBP8253_J25302333]: Speciation, Mapping --> 98 XarbguizotiaeCFBP7409_G40901624: Leaf Node m9 = LCA[Xarb30043004_X00401832, XarbguizotiaeCFBP7409_G40901624]: Transfer, Mapping --> XarbguizotiaeCFBP7409, Recipient --> 98 XarbfragariaeCFBP6773_F77300180: Leaf Node m8 = LCA[Xarb30043004_X00401832, XarbfragariaeCFBP6773_F77300180]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> XarbguizotiaeCFBP7409 XarbfragariaeLMG19146_F14600169: Leaf Node m7 = LCA[Xarb30043004_X00401832, XarbfragariaeLMG19146_F14600169]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19144_F14400686: Leaf Node m6 = LCA[Xarb30043004_X00401832, XarbfragariaeLMG19144_F14400686]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144 XarbcelebensisNCPPB1630_C63002353: Leaf Node m5 = LCA[Xarb30043004_X00401832, XarbcelebensisNCPPB1630_C63002353]: Speciation, Mapping --> 100 XarbcorylinaCFBP1159_C15902446: Leaf Node m4 = LCA[Xarb30043004_X00401832, XarbcorylinaCFBP1159_C15902446]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> 100 XarbcorylinaCFBP2565_C56501901: Leaf Node m3 = LCA[Xarb30043004_X00401832, XarbcorylinaCFBP2565_C56501901]: Speciation, Mapping --> 100 XarbjuglandisJ303_J30301336: Leaf Node XarbjuglandisCPBF426_J42600081: Leaf Node XarbpruniCFBP3894_P89401318: Leaf Node XarbzantedeschiaeCFBP7410_Z41003549: Leaf Node XarbcorylinaNCCB100457_C45701538: Leaf Node m49 = LCA[XarbzantedeschiaeCFBP7410_Z41003549, XarbcorylinaNCCB100457_C45701538]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbcorylinaNCCB100457 m47 = LCA[XarbpruniCFBP3894_P89401318, XarbcorylinaNCCB100457_C45701538]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpruniCFBP3894 XarbpopuliCFBP3123_P12303052: Leaf Node m46 = LCA[XarbpruniCFBP3894_P89401318, XarbpopuliCFBP3123_P12303052]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpopuliCFBP3123 XarbarracaciaeCFBP7407_A40702308: Leaf Node m45 = LCA[XarbpruniCFBP3894_P89401318, XarbarracaciaeCFBP7407_A40702308]: Speciation, Mapping --> 25 XarbjuglandisCFBP2528_J52804102: Leaf Node m44 = LCA[XarbpruniCFBP3894_P89401318, XarbjuglandisCFBP2528_J52804102]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> 25 XarbjuglandisNCPPB1447_J44703611: Leaf Node m43 = LCA[XarbpruniCFBP3894_P89401318, XarbjuglandisNCPPB1447_J44703611]: Speciation, Mapping --> 100 m41 = LCA[XarbjuglandisCPBF426_J42600081, XarbjuglandisNCPPB1447_J44703611]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF426 XarbjuglandisDW3F3_J3F303658: Leaf Node m40 = LCA[XarbjuglandisCPBF426_J42600081, XarbjuglandisDW3F3_J3F303658]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 m38 = LCA[XarbjuglandisJ303_J30301336, XarbjuglandisDW3F3_J3F303658]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisJ303 XarbjuglandisCFBP7179_J17903051: Leaf Node m37 = LCA[XarbjuglandisJ303_J30301336, XarbjuglandisCFBP7179_J17903051]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7408_G40802477: Leaf Node m36 = LCA[XarbjuglandisJ303_J30301336, XarbguizotiaeCFBP7408_G40802477]: Transfer, Mapping --> 100, Recipient --> XarbguizotiaeCFBP7408 XarbfragariaeCFBP6762_F76203715: Leaf Node m35 = LCA[XarbjuglandisJ303_J30301336, XarbfragariaeCFBP6762_F76203715]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> 100 XarbfragariaeLMG19145_F14500419: Leaf Node m34 = LCA[XarbjuglandisJ303_J30301336, XarbfragariaeLMG19145_F14500419]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbfragariaeLMG19145 m2 = LCA[Xarb30043004_X00401832, XarbfragariaeLMG19145_F14500419]: Speciation, Mapping --> 25 XarbcelebensisNCPPB1832_C83200188: Leaf Node m1 = LCA[Xarb30043004_X00401832, XarbcelebensisNCPPB1832_C83200188]: Transfer, Mapping --> 25, Recipient --> XarbcelebensisNCPPB1832 The minimum reconciliation cost is: 69 (Duplications: 0, Transfers: 21, Losses: 6) Total number of optimal solutions: 216 Total number of candidates for gene birth: 3