------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: (((((((((((((((((Xarb30043004_X00400032,XgardineriSM40611_X61102516)m17,XarbpruniIVIA26261_P26102352)m16,XarbpopuliCFBP3122_P12203556)m15,XarbjuglandisCPBF1521_J52103952)m14,XarbjuglandisCPBF427_J42703221)m13,XarbjuglandisXaj417_J41704150)m12,XarbjuglandisCPBF367_J36702392)m11,XarbjuglandisCFBP8253_J25301236)m10,XarbguizotiaeCFBP7409_G40902171)m9,XarbfragariaeCFBP6773_F77300549)m8,XarbfragariaeLMG19146_F14600280)m7,XarbfragariaeLMG19144_F14402968)m6,XarbcelebensisNCPPB1630_C63002463)m5,XarbcorylinaCFBP1159_C15900692)m4,XarbcorylinaCFBP2565_C56501793)m3,(((((XarbjuglandisJ303_J30302148,((XarbjuglandisCPBF426_J42600189,(((((XarbpruniCFBP3894_P89401422,(XarbzantedeschiaeCFBP7410_Z41003146,XarbcorylinaNCCB100457_C45701601)m49)m47,XarbpopuliCFBP3123_P12302941)m46,XarbarracaciaeCFBP7407_A40702140)m45,XarbjuglandisCFBP2528_J52803899)m44,XarbjuglandisNCPPB1447_J44701772)m43)m41,XarbjuglandisDW3F3_J3F303775)m40)m38,XarbjuglandisCFBP7179_J17902931)m37,XarbguizotiaeCFBP7408_G40803015)m36,XarbfragariaeCFBP6762_F76204014)m35,XarbfragariaeLMG19145_F14500304)m34)m2,XarbcelebensisNCPPB1832_C83200079)m1; Reconciliation: Xarb30043004_X00400032: Leaf Node XgardineriSM40611_X61102516: Leaf Node m17 = LCA[Xarb30043004_X00400032, XgardineriSM40611_X61102516]: Transfer, Mapping --> 78, Recipient --> Xarb30043004 XarbpruniIVIA26261_P26102352: Leaf Node m16 = LCA[Xarb30043004_X00400032, XarbpruniIVIA26261_P26102352]: Transfer, Mapping --> 78, Recipient --> XarbpruniIVIA26261 XarbpopuliCFBP3122_P12203556: Leaf Node m15 = LCA[Xarb30043004_X00400032, XarbpopuliCFBP3122_P12203556]: Speciation, Mapping --> 100 XarbjuglandisCPBF1521_J52103952: Leaf Node m14 = LCA[Xarb30043004_X00400032, XarbjuglandisCPBF1521_J52103952]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisCPBF427_J42703221: Leaf Node m13 = LCA[Xarb30043004_X00400032, XarbjuglandisCPBF427_J42703221]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41704150: Leaf Node m12 = LCA[Xarb30043004_X00400032, XarbjuglandisXaj417_J41704150]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> 100 XarbjuglandisCPBF367_J36702392: Leaf Node m11 = LCA[Xarb30043004_X00400032, XarbjuglandisCPBF367_J36702392]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCPBF367 XarbjuglandisCFBP8253_J25301236: Leaf Node m10 = LCA[Xarb30043004_X00400032, XarbjuglandisCFBP8253_J25301236]: Speciation, Mapping --> 98 XarbguizotiaeCFBP7409_G40902171: Leaf Node m9 = LCA[Xarb30043004_X00400032, XarbguizotiaeCFBP7409_G40902171]: Transfer, Mapping --> 98, Recipient --> XarbguizotiaeCFBP7409 XarbfragariaeCFBP6773_F77300549: Leaf Node m8 = LCA[Xarb30043004_X00400032, XarbfragariaeCFBP6773_F77300549]: Transfer, Mapping --> 98, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19146_F14600280: Leaf Node m7 = LCA[Xarb30043004_X00400032, XarbfragariaeLMG19146_F14600280]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 98 XarbfragariaeLMG19144_F14402968: Leaf Node m6 = LCA[Xarb30043004_X00400032, XarbfragariaeLMG19144_F14402968]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeLMG19144 XarbcelebensisNCPPB1630_C63002463: Leaf Node m5 = LCA[Xarb30043004_X00400032, XarbcelebensisNCPPB1630_C63002463]: Speciation, Mapping --> 100 XarbcorylinaCFBP1159_C15900692: Leaf Node m4 = LCA[Xarb30043004_X00400032, XarbcorylinaCFBP1159_C15900692]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> 100 XarbcorylinaCFBP2565_C56501793: Leaf Node m3 = LCA[Xarb30043004_X00400032, XarbcorylinaCFBP2565_C56501793]: Speciation, Mapping --> 100 XarbjuglandisJ303_J30302148: Leaf Node XarbjuglandisCPBF426_J42600189: Leaf Node XarbpruniCFBP3894_P89401422: Leaf Node XarbzantedeschiaeCFBP7410_Z41003146: Leaf Node XarbcorylinaNCCB100457_C45701601: Leaf Node m49 = LCA[XarbzantedeschiaeCFBP7410_Z41003146, XarbcorylinaNCCB100457_C45701601]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbcorylinaNCCB100457 m47 = LCA[XarbpruniCFBP3894_P89401422, XarbcorylinaNCCB100457_C45701601]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpruniCFBP3894 XarbpopuliCFBP3123_P12302941: Leaf Node m46 = LCA[XarbpruniCFBP3894_P89401422, XarbpopuliCFBP3123_P12302941]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpopuliCFBP3123 XarbarracaciaeCFBP7407_A40702140: Leaf Node m45 = LCA[XarbpruniCFBP3894_P89401422, XarbarracaciaeCFBP7407_A40702140]: Speciation, Mapping --> 25 XarbjuglandisCFBP2528_J52803899: Leaf Node m44 = LCA[XarbpruniCFBP3894_P89401422, XarbjuglandisCFBP2528_J52803899]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> 25 XarbjuglandisNCPPB1447_J44701772: Leaf Node m43 = LCA[XarbpruniCFBP3894_P89401422, XarbjuglandisNCPPB1447_J44701772]: Speciation, Mapping --> 100 m41 = LCA[XarbjuglandisCPBF426_J42600189, XarbjuglandisNCPPB1447_J44701772]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF426 XarbjuglandisDW3F3_J3F303775: Leaf Node m40 = LCA[XarbjuglandisCPBF426_J42600189, XarbjuglandisDW3F3_J3F303775]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 m38 = LCA[XarbjuglandisJ303_J30302148, XarbjuglandisDW3F3_J3F303775]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisJ303 XarbjuglandisCFBP7179_J17902931: Leaf Node m37 = LCA[XarbjuglandisJ303_J30302148, XarbjuglandisCFBP7179_J17902931]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7408_G40803015: Leaf Node m36 = LCA[XarbjuglandisJ303_J30302148, XarbguizotiaeCFBP7408_G40803015]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 100 XarbfragariaeCFBP6762_F76204014: Leaf Node m35 = LCA[XarbjuglandisJ303_J30302148, XarbfragariaeCFBP6762_F76204014]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbguizotiaeCFBP7408 XarbfragariaeLMG19145_F14500304: Leaf Node m34 = LCA[XarbjuglandisJ303_J30302148, XarbfragariaeLMG19145_F14500304]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbfragariaeLMG19145 m2 = LCA[Xarb30043004_X00400032, XarbfragariaeLMG19145_F14500304]: Speciation, Mapping --> 25 XarbcelebensisNCPPB1832_C83200079: Leaf Node m1 = LCA[Xarb30043004_X00400032, XarbcelebensisNCPPB1832_C83200079]: Transfer, Mapping --> 25, Recipient --> XarbcelebensisNCPPB1832 The minimum reconciliation cost is: 69 (Duplications: 0, Transfers: 21, Losses: 6) Total number of optimal solutions: 216 Total number of candidates for gene birth: 3