------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (Xarb30043004,((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((((XarbguizotiaeCFBP7408_G40800599,XarbguizotiaeCFBP7409_G40900311)m20,XarbzantedeschiaeCFBP7410_Z41002518)m19,XarbpopuliCFBP3123_P12302758)m18,XarbjuglandisCPBF367_J36700940)m17,XarbfragariaeCFBP6762_F76200579)m16,((((Xarb30043004_X00400666,XarbarracaciaeCFBP7407_A40701415)m30,XarbjuglandisCPBF426_J42601360)m29,XarbfragariaeCFBP6773_F77301528)m28,XarbfragariaeLMG19145_F14503237)m27)m15,(XarbjuglandisCFBP8253_J25301079,XarbjuglandisXaj417_J41702847)m36)m14,XarbjuglandisCFBP2528_J52802262)m13,XarbjuglandisDW3F3_J3F302503)m12,XarbfragariaeLMG19146_F14601622)m11,XarbcelebensisNCPPB1832_C83200757)m10,((((XarbcelebensisNCPPB1630_C63001218,XarbpopuliCFBP3122_P12200954)m46,XarbjuglandisNCPPB1447_J44702625)m45,XarbjuglandisCFBP7179_J17901796)m44,XarbfragariaeLMG19144_F14402890)m43)m9,XarbcorylinaNCCB100457_C45703210)m8,(XarbcorylinaCFBP1159_C15901442,XgardineriSM40611_X61103671)m53)m7,XarbpruniIVIA26261_P26100875)m6,XarbjuglandisCPBF427_J42701094)m5,XarbcorylinaCFBP2565_C56500890)m4,XarbjuglandisJ303_J30303325)m3,XarbjuglandisCPBF1521_J52102450)m2,XarbpruniCFBP3894_P89402010)m1; Reconciliation: XarbguizotiaeCFBP7408_G40800599: Leaf Node XarbguizotiaeCFBP7409_G40900311: Leaf Node m20 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbguizotiaeCFBP7409_G40900311]: Speciation, Mapping --> 100 XarbzantedeschiaeCFBP7410_Z41002518: Leaf Node m19 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbzantedeschiaeCFBP7410_Z41002518]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> 100 XarbpopuliCFBP3123_P12302758: Leaf Node m18 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbpopuliCFBP3123_P12302758]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpopuliCFBP3123 XarbjuglandisCPBF367_J36700940: Leaf Node m17 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisCPBF367_J36700940]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbzantedeschiaeCFBP7410 XarbfragariaeCFBP6762_F76200579: Leaf Node m16 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbfragariaeCFBP6762_F76200579]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbfragariaeCFBP6762 Xarb30043004_X00400666: Leaf Node XarbarracaciaeCFBP7407_A40701415: Leaf Node m30 = LCA[Xarb30043004_X00400666, XarbarracaciaeCFBP7407_A40701415]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbarracaciaeCFBP7407 XarbjuglandisCPBF426_J42601360: Leaf Node m29 = LCA[Xarb30043004_X00400666, XarbjuglandisCPBF426_J42601360]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> Xarb30043004 XarbfragariaeCFBP6773_F77301528: Leaf Node m28 = LCA[Xarb30043004_X00400666, XarbfragariaeCFBP6773_F77301528]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19145_F14503237: Leaf Node m27 = LCA[Xarb30043004_X00400666, XarbfragariaeLMG19145_F14503237]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbfragariaeLMG19145 m15 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbfragariaeLMG19145_F14503237]: Speciation, Mapping --> 100 XarbjuglandisCFBP8253_J25301079: Leaf Node XarbjuglandisXaj417_J41702847: Leaf Node m36 = LCA[XarbjuglandisCFBP8253_J25301079, XarbjuglandisXaj417_J41702847]: Speciation, Mapping --> 98 m14 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisXaj417_J41702847]: Transfer, Mapping --> 100, Recipient --> 98 XarbjuglandisCFBP2528_J52802262: Leaf Node m13 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisCFBP2528_J52802262]: Transfer, Mapping --> 100, Recipient --> 100 XarbjuglandisDW3F3_J3F302503: Leaf Node m12 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisDW3F3_J3F302503]: Speciation, Mapping --> 100 XarbfragariaeLMG19146_F14601622: Leaf Node m11 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbfragariaeLMG19146_F14601622]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100 XarbcelebensisNCPPB1832_C83200757: Leaf Node m10 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbcelebensisNCPPB1832_C83200757]: Speciation, Mapping --> 100 XarbcelebensisNCPPB1630_C63001218: Leaf Node XarbpopuliCFBP3122_P12200954: Leaf Node m46 = LCA[XarbcelebensisNCPPB1630_C63001218, XarbpopuliCFBP3122_P12200954]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbpopuliCFBP3122 XarbjuglandisNCPPB1447_J44702625: Leaf Node m45 = LCA[XarbcelebensisNCPPB1630_C63001218, XarbjuglandisNCPPB1447_J44702625]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbjuglandisNCPPB1447 XarbjuglandisCFBP7179_J17901796: Leaf Node m44 = LCA[XarbcelebensisNCPPB1630_C63001218, XarbjuglandisCFBP7179_J17901796]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbjuglandisCFBP7179 XarbfragariaeLMG19144_F14402890: Leaf Node m43 = LCA[XarbcelebensisNCPPB1630_C63001218, XarbfragariaeLMG19144_F14402890]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbfragariaeLMG19144 m9 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbfragariaeLMG19144_F14402890]: Speciation, Mapping --> 100 XarbcorylinaNCCB100457_C45703210: Leaf Node m8 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbcorylinaNCCB100457_C45703210]: Transfer, Mapping --> 100, Recipient --> 100 XarbcorylinaCFBP1159_C15901442: Leaf Node XgardineriSM40611_X61103671: Leaf Node m53 = LCA[XarbcorylinaCFBP1159_C15901442, XgardineriSM40611_X61103671]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XgardineriSM40611 m7 = LCA[XarbguizotiaeCFBP7408_G40800599, XgardineriSM40611_X61103671]: Speciation, Mapping --> 100 XarbpruniIVIA26261_P26100875: Leaf Node m6 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbpruniIVIA26261_P26100875]: Speciation, Mapping --> 100 XarbjuglandisCPBF427_J42701094: Leaf Node m5 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisCPBF427_J42701094]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> 100 XarbcorylinaCFBP2565_C56500890: Leaf Node m4 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbcorylinaCFBP2565_C56500890]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> XarbcorylinaCFBP2565 XarbjuglandisJ303_J30303325: Leaf Node m3 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisJ303_J30303325]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> XarbjuglandisJ303 XarbjuglandisCPBF1521_J52102450: Leaf Node m2 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbjuglandisCPBF1521_J52102450]: Speciation, Mapping --> 100 XarbpruniCFBP3894_P89402010: Leaf Node m1 = LCA[XarbguizotiaeCFBP7408_G40800599, XarbpruniCFBP3894_P89402010]: Transfer, Mapping --> 100, Recipient --> XarbpruniCFBP3894 The minimum reconciliation cost is: 67 (Duplications: 0, Transfers: 21, Losses: 4) Total number of optimal solutions: 324 Total number of candidates for gene birth: 2