------------ Reconciliation for Gene Tree 1 (rooted) -------------
Species Tree: 
((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1;

Gene Tree: 
((((((((((((((((((((XarbjuglandisXaj417_J41701606,(XarbjuglandisCFBP8253_J25300869,XarbjuglandisNCPPB1447_J44702017)m22)m20,XarbjuglandisJ303_J30300190)m19,(((XarbjuglandisCFBP7179_J17900413,XarbjuglandisCPBF1521_J52102089)m28,XarbjuglandisCPBF427_J42700814)m27,XarbjuglandisDW3F3_J3F301350)m26)m18,XarbcorylinaCFBP1159_C15903712)m17,XarbpruniIVIA26261_P26102041)m16,((XarbpruniCFBP3894_P89401131,XarbcorylinaNCCB100457_C45703572)m36,XarbcorylinaCFBP2565_C56500482)m35)m15,XgardineriSM40611_X61101611)m14,(XarbpopuliCFBP3123_P12301157,XarbpopuliCFBP3122_P12201785)m41)m13,XarbfragariaeLMG19145_F14501827)m12,XarbfragariaeCFBP6773_F77300906)m11,XarbfragariaeLMG19146_F14600462)m10,XarbcelebensisNCPPB1832_C83203786)m9,XarbarracaciaeCFBP7407_A40702779)m8,(XarbjuglandisCPBF426_J42603625,XarbjuglandisCPBF367_J36700818)m49)m7,XarbcelebensisNCPPB1630_C63003532)m6,XarbfragariaeLMG19144_F14402416)m5,XarbfragariaeCFBP6762_F76202920)m4,Xarb30043004_X00400317)m3,(XarbguizotiaeCFBP7409_G40902961,XarbguizotiaeCFBP7408_G40803318)m56)m2,XarbzantedeschiaeCFBP7410_Z41004014)m1;

Reconciliation:
XarbjuglandisXaj417_J41701606: Leaf Node
XarbjuglandisCFBP8253_J25300869: Leaf Node
XarbjuglandisNCPPB1447_J44702017: Leaf Node
m22 = LCA[XarbjuglandisCFBP8253_J25300869, XarbjuglandisNCPPB1447_J44702017]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisNCPPB1447
m20 = LCA[XarbjuglandisXaj417_J41701606, XarbjuglandisNCPPB1447_J44702017]: Speciation, Mapping --> 98
XarbjuglandisJ303_J30300190: Leaf Node
m19 = LCA[XarbjuglandisXaj417_J41701606, XarbjuglandisJ303_J30300190]: Speciation, Mapping --> 100
XarbjuglandisCFBP7179_J17900413: Leaf Node
XarbjuglandisCPBF1521_J52102089: Leaf Node
m28 = LCA[XarbjuglandisCFBP7179_J17900413, XarbjuglandisCPBF1521_J52102089]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisCPBF1521
XarbjuglandisCPBF427_J42700814: Leaf Node
m27 = LCA[XarbjuglandisCFBP7179_J17900413, XarbjuglandisCPBF427_J42700814]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisCPBF427
XarbjuglandisDW3F3_J3F301350: Leaf Node
m26 = LCA[XarbjuglandisCFBP7179_J17900413, XarbjuglandisDW3F3_J3F301350]: Speciation, Mapping --> 100
m18 = LCA[XarbjuglandisXaj417_J41701606, XarbjuglandisDW3F3_J3F301350]: Speciation, Mapping --> 100
XarbcorylinaCFBP1159_C15903712: Leaf Node
m17 = LCA[XarbjuglandisXaj417_J41701606, XarbcorylinaCFBP1159_C15903712]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> 100
XarbpruniIVIA26261_P26102041: Leaf Node
m16 = LCA[XarbjuglandisXaj417_J41701606, XarbpruniIVIA26261_P26102041]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XarbpruniIVIA26261
XarbpruniCFBP3894_P89401131: Leaf Node
XarbcorylinaNCCB100457_C45703572: Leaf Node
m36 = LCA[XarbpruniCFBP3894_P89401131, XarbcorylinaNCCB100457_C45703572]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbpruniCFBP3894
XarbcorylinaCFBP2565_C56500482: Leaf Node
m35 = LCA[XarbpruniCFBP3894_P89401131, XarbcorylinaCFBP2565_C56500482]: Speciation, Mapping --> 100
m15 = LCA[XarbjuglandisXaj417_J41701606, XarbcorylinaCFBP2565_C56500482]: Speciation, Mapping --> 100
XgardineriSM40611_X61101611: Leaf Node
m14 = LCA[XarbjuglandisXaj417_J41701606, XgardineriSM40611_X61101611]: Transfer, Mapping --> XgardineriSM40611, Recipient --> 100
XarbpopuliCFBP3123_P12301157: Leaf Node
XarbpopuliCFBP3122_P12201785: Leaf Node
m41 = LCA[XarbpopuliCFBP3123_P12301157, XarbpopuliCFBP3122_P12201785]: Speciation, Mapping --> 100
m13 = LCA[XarbjuglandisXaj417_J41701606, XarbpopuliCFBP3122_P12201785]: Speciation, Mapping --> 100
XarbfragariaeLMG19145_F14501827: Leaf Node
m12 = LCA[XarbjuglandisXaj417_J41701606, XarbfragariaeLMG19145_F14501827]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> 100
XarbfragariaeCFBP6773_F77300906: Leaf Node
m11 = LCA[XarbjuglandisXaj417_J41701606, XarbfragariaeCFBP6773_F77300906]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> XarbfragariaeCFBP6773
XarbfragariaeLMG19146_F14600462: Leaf Node
m10 = LCA[XarbjuglandisXaj417_J41701606, XarbfragariaeLMG19146_F14600462]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeLMG19145
XarbcelebensisNCPPB1832_C83203786: Leaf Node
m9 = LCA[XarbjuglandisXaj417_J41701606, XarbcelebensisNCPPB1832_C83203786]: Speciation, Mapping --> 100
XarbarracaciaeCFBP7407_A40702779: Leaf Node
m8 = LCA[XarbjuglandisXaj417_J41701606, XarbarracaciaeCFBP7407_A40702779]: Transfer, Mapping --> 100, Recipient --> XarbarracaciaeCFBP7407
XarbjuglandisCPBF426_J42603625: Leaf Node
XarbjuglandisCPBF367_J36700818: Leaf Node
m49 = LCA[XarbjuglandisCPBF426_J42603625, XarbjuglandisCPBF367_J36700818]: Speciation, Mapping --> 100
m7 = LCA[XarbjuglandisXaj417_J41701606, XarbjuglandisCPBF367_J36700818]: Transfer, Mapping --> 100, Recipient --> 100
XarbcelebensisNCPPB1630_C63003532: Leaf Node
m6 = LCA[XarbjuglandisXaj417_J41701606, XarbcelebensisNCPPB1630_C63003532]: Speciation, Mapping --> 100
XarbfragariaeLMG19144_F14402416: Leaf Node
m5 = LCA[XarbjuglandisXaj417_J41701606, XarbfragariaeLMG19144_F14402416]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144
XarbfragariaeCFBP6762_F76202920: Leaf Node
m4 = LCA[XarbjuglandisXaj417_J41701606, XarbfragariaeCFBP6762_F76202920]: Speciation, Mapping --> 25
Xarb30043004_X00400317: Leaf Node
m3 = LCA[XarbjuglandisXaj417_J41701606, Xarb30043004_X00400317]: Transfer, Mapping --> 25, Recipient --> Xarb30043004
XarbguizotiaeCFBP7409_G40902961: Leaf Node
XarbguizotiaeCFBP7408_G40803318: Leaf Node
m56 = LCA[XarbguizotiaeCFBP7409_G40902961, XarbguizotiaeCFBP7408_G40803318]: Speciation, Mapping --> 100
m2 = LCA[XarbjuglandisXaj417_J41701606, XarbguizotiaeCFBP7408_G40803318]: Transfer, Mapping --> 100, Recipient --> 25
XarbzantedeschiaeCFBP7410_Z41004014: Leaf Node
m1 = LCA[XarbjuglandisXaj417_J41701606, XarbzantedeschiaeCFBP7410_Z41004014]: Transfer, Mapping --> 100, Recipient --> XarbzantedeschiaeCFBP7410

The minimum reconciliation cost is: 53 (Duplications: 0, Transfers: 16, Losses: 5)
Total number of optimal solutions: 600
Total number of candidates for gene birth: 5