------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: (((((((((((((((XarbfragariaeLMG19146_F14602194,((((((((XarbjuglandisCPBF367_J36701740,XarbjuglandisCPBF426_J42602780)m24,XarbarracaciaeCFBP7407_A40701044)m23,XarbcorylinaCFBP1159_C15900255)m22,XarbcorylinaNCCB100457_C45702322)m21,XarbcorylinaCFBP2565_C56502299)m20,XarbcelebensisNCPPB1630_C63003056)m19,XarbcelebensisNCPPB1832_C83201573)m18,XarbfragariaeLMG19144_F14402025)m17)m15,XarbfragariaeCFBP6762_F76201003)m14,XarbfragariaeCFBP6773_F77303529)m13,XarbjuglandisCFBP7179_J17901331)m12,XarbjuglandisCFBP8253_J25301431)m11,XarbjuglandisJ303_J30303876)m10,XarbjuglandisDW3F3_J3F300275)m9,XarbjuglandisXaj417_J41700419)m8,XarbjuglandisCPBF427_J42704292)m7,(((XarbzantedeschiaeCFBP7410_Z41000605,XarbpruniCFBP3894_P89403357)m44,XarbjuglandisCFBP2528_J52800749)m43,XarbjuglandisCPBF1521_J52100392)m42)m6,XarbpruniIVIA26261_P26100236)m5,(((XarbguizotiaeCFBP7409_G40901763,XarbguizotiaeCFBP7408_G40801888)m52,Xarb30043004_X00402108)m51,XarbfragariaeLMG19145_F14501005)m50)m4,XarbpopuliCFBP3123_P12301550)m3,XgardineriSM40611_X61104363)m2,XarbpopuliCFBP3122_P12200362)m1; Reconciliation: XarbfragariaeLMG19146_F14602194: Leaf Node XarbjuglandisCPBF367_J36701740: Leaf Node XarbjuglandisCPBF426_J42602780: Leaf Node m24 = LCA[XarbjuglandisCPBF367_J36701740, XarbjuglandisCPBF426_J42602780]: Speciation, Mapping --> 100 XarbarracaciaeCFBP7407_A40701044: Leaf Node m23 = LCA[XarbjuglandisCPBF367_J36701740, XarbarracaciaeCFBP7407_A40701044]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> 100 XarbcorylinaCFBP1159_C15900255: Leaf Node m22 = LCA[XarbjuglandisCPBF367_J36701740, XarbcorylinaCFBP1159_C15900255]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XarbarracaciaeCFBP7407 XarbcorylinaNCCB100457_C45702322: Leaf Node m21 = LCA[XarbjuglandisCPBF367_J36701740, XarbcorylinaNCCB100457_C45702322]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcorylinaCFBP1159 XarbcorylinaCFBP2565_C56502299: Leaf Node m20 = LCA[XarbjuglandisCPBF367_J36701740, XarbcorylinaCFBP2565_C56502299]: Speciation, Mapping --> 100 XarbcelebensisNCPPB1630_C63003056: Leaf Node m19 = LCA[XarbjuglandisCPBF367_J36701740, XarbcelebensisNCPPB1630_C63003056]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> 100 XarbcelebensisNCPPB1832_C83201573: Leaf Node m18 = LCA[XarbjuglandisCPBF367_J36701740, XarbcelebensisNCPPB1832_C83201573]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbcelebensisNCPPB1630 XarbfragariaeLMG19144_F14402025: Leaf Node m17 = LCA[XarbjuglandisCPBF367_J36701740, XarbfragariaeLMG19144_F14402025]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19144 m15 = LCA[XarbfragariaeLMG19146_F14602194, XarbfragariaeLMG19144_F14402025]: Speciation, Mapping --> 100 XarbfragariaeCFBP6762_F76201003: Leaf Node m14 = LCA[XarbfragariaeLMG19146_F14602194, XarbfragariaeCFBP6762_F76201003]: Speciation, Mapping --> 25 XarbfragariaeCFBP6773_F77303529: Leaf Node m13 = LCA[XarbfragariaeLMG19146_F14602194, XarbfragariaeCFBP6773_F77303529]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> 25 XarbjuglandisCFBP7179_J17901331: Leaf Node m12 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisCFBP7179_J17901331]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> XarbjuglandisCFBP7179 XarbjuglandisCFBP8253_J25301431: Leaf Node m11 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisCFBP8253_J25301431]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbfragariaeCFBP6773 XarbjuglandisJ303_J30303876: Leaf Node m10 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisJ303_J30303876]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisJ303 XarbjuglandisDW3F3_J3F300275: Leaf Node m9 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisDW3F3_J3F300275]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisDW3F3 XarbjuglandisXaj417_J41700419: Leaf Node m8 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisXaj417_J41700419]: Speciation, Mapping --> 98 XarbjuglandisCPBF427_J42704292: Leaf Node m7 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisCPBF427_J42704292]: Speciation, Mapping --> 100 XarbzantedeschiaeCFBP7410_Z41000605: Leaf Node XarbpruniCFBP3894_P89403357: Leaf Node m44 = LCA[XarbzantedeschiaeCFBP7410_Z41000605, XarbpruniCFBP3894_P89403357]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbzantedeschiaeCFBP7410 XarbjuglandisCFBP2528_J52800749: Leaf Node m43 = LCA[XarbzantedeschiaeCFBP7410_Z41000605, XarbjuglandisCFBP2528_J52800749]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbjuglandisCFBP2528 XarbjuglandisCPBF1521_J52100392: Leaf Node m42 = LCA[XarbzantedeschiaeCFBP7410_Z41000605, XarbjuglandisCPBF1521_J52100392]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbjuglandisCPBF1521 m6 = LCA[XarbfragariaeLMG19146_F14602194, XarbjuglandisCPBF1521_J52100392]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> 100 XarbpruniIVIA26261_P26100236: Leaf Node m5 = LCA[XarbfragariaeLMG19146_F14602194, XarbpruniIVIA26261_P26100236]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7409_G40901763: Leaf Node XarbguizotiaeCFBP7408_G40801888: Leaf Node m52 = LCA[XarbguizotiaeCFBP7409_G40901763, XarbguizotiaeCFBP7408_G40801888]: Speciation, Mapping --> 100 Xarb30043004_X00402108: Leaf Node m51 = LCA[XarbguizotiaeCFBP7409_G40901763, Xarb30043004_X00402108]: Transfer, Mapping --> Xarb30043004, Recipient --> 100 XarbfragariaeLMG19145_F14501005: Leaf Node m50 = LCA[XarbguizotiaeCFBP7409_G40901763, XarbfragariaeLMG19145_F14501005]: Speciation, Mapping --> n2 m4 = LCA[XarbfragariaeLMG19146_F14602194, XarbfragariaeLMG19145_F14501005]: Transfer, Mapping --> 100, Recipient --> n2 XarbpopuliCFBP3123_P12301550: Leaf Node m3 = LCA[XarbfragariaeLMG19146_F14602194, XarbpopuliCFBP3123_P12301550]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> 100 XgardineriSM40611_X61104363: Leaf Node m2 = LCA[XarbfragariaeLMG19146_F14602194, XgardineriSM40611_X61104363]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> XgardineriSM40611 XarbpopuliCFBP3122_P12200362: Leaf Node m1 = LCA[XarbfragariaeLMG19146_F14602194, XarbpopuliCFBP3122_P12200362]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 62 (Duplications: 0, Transfers: 19, Losses: 5) Total number of optimal solutions: 176 Total number of candidates for gene birth: 1