------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: (((((((((((((((((Xarb30043004_X00401242,XgardineriSM40611_X61101923)m17,XarbpruniIVIA26261_P26103771)m16,XarbpopuliCFBP3122_P12203860)m15,XarbjuglandisCPBF1521_J52101284)m14,XarbjuglandisCPBF427_J42700476)m13,XarbjuglandisXaj417_J41701270)m12,XarbjuglandisCPBF367_J36702107)m11,XarbjuglandisCFBP8253_J25303986)m10,XarbguizotiaeCFBP7409_G40903788)m9,XarbfragariaeCFBP6773_F77303020)m8,XarbfragariaeLMG19146_F14601876)m7,XarbfragariaeLMG19144_F14403626)m6,XarbcelebensisNCPPB1630_C63003855)m5,XarbcorylinaCFBP1159_C15904089)m4,XarbcorylinaCFBP2565_C56500152)m3,(((((XarbjuglandisJ303_J30301978,((XarbjuglandisCPBF426_J42602456,(((((XarbpruniCFBP3894_P89404128,(XarbzantedeschiaeCFBP7410_Z41004101,XarbcorylinaNCCB100457_C45703929)m49)m47,XarbpopuliCFBP3123_P12303947)m46,XarbarracaciaeCFBP7407_A40703949)m45,XarbjuglandisCFBP2528_J52804155)m44,XarbjuglandisNCPPB1447_J44700030)m43)m41,XarbjuglandisDW3F3_J3F301018)m40)m38,XarbjuglandisCFBP7179_J17900088)m37,XarbguizotiaeCFBP7408_G40800103)m36,XarbfragariaeCFBP6762_F76202396)m35,XarbfragariaeLMG19145_F14502743)m34)m2,XarbcelebensisNCPPB1832_C83200011)m1; Reconciliation: Xarb30043004_X00401242: Leaf Node XgardineriSM40611_X61101923: Leaf Node m17 = LCA[Xarb30043004_X00401242, XgardineriSM40611_X61101923]: Transfer, Mapping --> XgardineriSM40611, Recipient --> Xarb30043004 XarbpruniIVIA26261_P26103771: Leaf Node m16 = LCA[Xarb30043004_X00401242, XarbpruniIVIA26261_P26103771]: Transfer, Mapping --> XgardineriSM40611, Recipient --> XarbpruniIVIA26261 XarbpopuliCFBP3122_P12203860: Leaf Node m15 = LCA[Xarb30043004_X00401242, XarbpopuliCFBP3122_P12203860]: Speciation, Mapping --> 100 XarbjuglandisCPBF1521_J52101284: Leaf Node m14 = LCA[Xarb30043004_X00401242, XarbjuglandisCPBF1521_J52101284]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisCPBF427_J42700476: Leaf Node m13 = LCA[Xarb30043004_X00401242, XarbjuglandisCPBF427_J42700476]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41701270: Leaf Node m12 = LCA[Xarb30043004_X00401242, XarbjuglandisXaj417_J41701270]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> 100 XarbjuglandisCPBF367_J36702107: Leaf Node m11 = LCA[Xarb30043004_X00401242, XarbjuglandisCPBF367_J36702107]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCPBF367 XarbjuglandisCFBP8253_J25303986: Leaf Node m10 = LCA[Xarb30043004_X00401242, XarbjuglandisCFBP8253_J25303986]: Speciation, Mapping --> 98 XarbguizotiaeCFBP7409_G40903788: Leaf Node m9 = LCA[Xarb30043004_X00401242, XarbguizotiaeCFBP7409_G40903788]: Transfer, Mapping --> XarbguizotiaeCFBP7409, Recipient --> 98 XarbfragariaeCFBP6773_F77303020: Leaf Node m8 = LCA[Xarb30043004_X00401242, XarbfragariaeCFBP6773_F77303020]: Transfer, Mapping --> XarbguizotiaeCFBP7409, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19146_F14601876: Leaf Node m7 = LCA[Xarb30043004_X00401242, XarbfragariaeLMG19146_F14601876]: Transfer, Mapping --> 100, Recipient --> XarbguizotiaeCFBP7409 XarbfragariaeLMG19144_F14403626: Leaf Node m6 = LCA[Xarb30043004_X00401242, XarbfragariaeLMG19144_F14403626]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144 XarbcelebensisNCPPB1630_C63003855: Leaf Node m5 = LCA[Xarb30043004_X00401242, XarbcelebensisNCPPB1630_C63003855]: Speciation, Mapping --> 100 XarbcorylinaCFBP1159_C15904089: Leaf Node m4 = LCA[Xarb30043004_X00401242, XarbcorylinaCFBP1159_C15904089]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> 100 XarbcorylinaCFBP2565_C56500152: Leaf Node m3 = LCA[Xarb30043004_X00401242, XarbcorylinaCFBP2565_C56500152]: Speciation, Mapping --> 100 XarbjuglandisJ303_J30301978: Leaf Node XarbjuglandisCPBF426_J42602456: Leaf Node XarbpruniCFBP3894_P89404128: Leaf Node XarbzantedeschiaeCFBP7410_Z41004101: Leaf Node XarbcorylinaNCCB100457_C45703929: Leaf Node m49 = LCA[XarbzantedeschiaeCFBP7410_Z41004101, XarbcorylinaNCCB100457_C45703929]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbcorylinaNCCB100457 m47 = LCA[XarbpruniCFBP3894_P89404128, XarbcorylinaNCCB100457_C45703929]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpruniCFBP3894 XarbpopuliCFBP3123_P12303947: Leaf Node m46 = LCA[XarbpruniCFBP3894_P89404128, XarbpopuliCFBP3123_P12303947]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbpopuliCFBP3123 XarbarracaciaeCFBP7407_A40703949: Leaf Node m45 = LCA[XarbpruniCFBP3894_P89404128, XarbarracaciaeCFBP7407_A40703949]: Speciation, Mapping --> 25 XarbjuglandisCFBP2528_J52804155: Leaf Node m44 = LCA[XarbpruniCFBP3894_P89404128, XarbjuglandisCFBP2528_J52804155]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> 25 XarbjuglandisNCPPB1447_J44700030: Leaf Node m43 = LCA[XarbpruniCFBP3894_P89404128, XarbjuglandisNCPPB1447_J44700030]: Speciation, Mapping --> 100 m41 = LCA[XarbjuglandisCPBF426_J42602456, XarbjuglandisNCPPB1447_J44700030]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF426 XarbjuglandisDW3F3_J3F301018: Leaf Node m40 = LCA[XarbjuglandisCPBF426_J42602456, XarbjuglandisDW3F3_J3F301018]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 m38 = LCA[XarbjuglandisJ303_J30301978, XarbjuglandisDW3F3_J3F301018]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisJ303 XarbjuglandisCFBP7179_J17900088: Leaf Node m37 = LCA[XarbjuglandisJ303_J30301978, XarbjuglandisCFBP7179_J17900088]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7408_G40800103: Leaf Node m36 = LCA[XarbjuglandisJ303_J30301978, XarbguizotiaeCFBP7408_G40800103]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 100 XarbfragariaeCFBP6762_F76202396: Leaf Node m35 = LCA[XarbjuglandisJ303_J30301978, XarbfragariaeCFBP6762_F76202396]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbguizotiaeCFBP7408 XarbfragariaeLMG19145_F14502743: Leaf Node m34 = LCA[XarbjuglandisJ303_J30301978, XarbfragariaeLMG19145_F14502743]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbfragariaeLMG19145 m2 = LCA[Xarb30043004_X00401242, XarbfragariaeLMG19145_F14502743]: Speciation, Mapping --> 25 XarbcelebensisNCPPB1832_C83200011: Leaf Node m1 = LCA[Xarb30043004_X00401242, XarbcelebensisNCPPB1832_C83200011]: Transfer, Mapping --> 25, Recipient --> XarbcelebensisNCPPB1832 The minimum reconciliation cost is: 69 (Duplications: 0, Transfers: 21, Losses: 6) Total number of optimal solutions: 216 Total number of candidates for gene birth: 3