------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: ((((((((((((((((XarbpruniIVIA26261_P26100467,XgardineriSM40611_X61102433)m16,XarbjuglandisCFBP2528_J52802466)m15,XarbjuglandisNCPPB1447_J44702993)m14,XarbjuglandisXaj417_J41701114)m13,XarbjuglandisJ303_J30302628)m12,XarbjuglandisCFBP7179_J17902000)m11,XarbfragariaeCFBP6762_F76202538)m10,XarbcelebensisNCPPB1832_C83202739)m9,XarbcorylinaNCCB100457_C45704070)m8,(XarbcorylinaCFBP1159_C15901790,((XarbfragariaeLMG19146_F14602626,((((XarbjuglandisCPBF427_J42700558,(XarbjuglandisCPBF1521_J52101336,(XarbpopuliCFBP3123_P12300659,(XarbarracaciaeCFBP7407_A40703529,XarbpruniCFBP3894_P89400745)m41)m39)m37)m35,XarbjuglandisDW3F3_J3F302702)m34,XarbjuglandisCFBP8253_J25303430)m33,XarbfragariaeCFBP6773_F77302035)m32)m30,XarbcorylinaCFBP2565_C56500005)m29)m27)m7,XarbzantedeschiaeCFBP7410_Z41002683)m6,XarbjuglandisCPBF426_J42602378)m5,XarbfragariaeLMG19145_F14500614)m4,((XarbjuglandisCPBF367_J36702312,(XarbcelebensisNCPPB1630_C63004002,XarbpopuliCFBP3122_P12201659)m54)m52,XarbfragariaeLMG19144_F14403772)m51)m3,(XarbguizotiaeCFBP7409_G40902359,XarbguizotiaeCFBP7408_G40801571)m58)m2,Xarb30043004_X00401289)m1; Reconciliation: XarbpruniIVIA26261_P26100467: Leaf Node XgardineriSM40611_X61102433: Leaf Node m16 = LCA[XarbpruniIVIA26261_P26100467, XgardineriSM40611_X61102433]: Transfer, Mapping --> XgardineriSM40611, Recipient --> XarbpruniIVIA26261 XarbjuglandisCFBP2528_J52802466: Leaf Node m15 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisCFBP2528_J52802466]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XgardineriSM40611 XarbjuglandisNCPPB1447_J44702993: Leaf Node m14 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisNCPPB1447_J44702993]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41701114: Leaf Node m13 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisXaj417_J41701114]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 XarbjuglandisJ303_J30302628: Leaf Node m12 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisJ303_J30302628]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisJ303 XarbjuglandisCFBP7179_J17902000: Leaf Node m11 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisCFBP7179_J17902000]: Speciation, Mapping --> 100 XarbfragariaeCFBP6762_F76202538: Leaf Node m10 = LCA[XarbpruniIVIA26261_P26100467, XarbfragariaeCFBP6762_F76202538]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> 100 XarbcelebensisNCPPB1832_C83202739: Leaf Node m9 = LCA[XarbpruniIVIA26261_P26100467, XarbcelebensisNCPPB1832_C83202739]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbcelebensisNCPPB1832 XarbcorylinaNCCB100457_C45704070: Leaf Node m8 = LCA[XarbpruniIVIA26261_P26100467, XarbcorylinaNCCB100457_C45704070]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbcorylinaNCCB100457 XarbcorylinaCFBP1159_C15901790: Leaf Node XarbfragariaeLMG19146_F14602626: Leaf Node XarbjuglandisCPBF427_J42700558: Leaf Node XarbjuglandisCPBF1521_J52101336: Leaf Node XarbpopuliCFBP3123_P12300659: Leaf Node XarbarracaciaeCFBP7407_A40703529: Leaf Node XarbpruniCFBP3894_P89400745: Leaf Node m41 = LCA[XarbarracaciaeCFBP7407_A40703529, XarbpruniCFBP3894_P89400745]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbarracaciaeCFBP7407 m39 = LCA[XarbpopuliCFBP3123_P12300659, XarbpruniCFBP3894_P89400745]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> XarbpopuliCFBP3123 m37 = LCA[XarbjuglandisCPBF1521_J52101336, XarbpruniCFBP3894_P89400745]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbpruniCFBP3894 m35 = LCA[XarbjuglandisCPBF427_J42700558, XarbpruniCFBP3894_P89400745]: Speciation, Mapping --> 100 XarbjuglandisDW3F3_J3F302702: Leaf Node m34 = LCA[XarbjuglandisCPBF427_J42700558, XarbjuglandisDW3F3_J3F302702]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 XarbjuglandisCFBP8253_J25303430: Leaf Node m33 = LCA[XarbjuglandisCPBF427_J42700558, XarbjuglandisCFBP8253_J25303430]: Speciation, Mapping --> 100 XarbfragariaeCFBP6773_F77302035: Leaf Node m32 = LCA[XarbjuglandisCPBF427_J42700558, XarbfragariaeCFBP6773_F77302035]: Transfer, Mapping --> XarbfragariaeCFBP6773, Recipient --> 100 m30 = LCA[XarbfragariaeLMG19146_F14602626, XarbfragariaeCFBP6773_F77302035]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeCFBP6773 XarbcorylinaCFBP2565_C56500005: Leaf Node m29 = LCA[XarbfragariaeLMG19146_F14602626, XarbcorylinaCFBP2565_C56500005]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> XarbfragariaeLMG19146 m27 = LCA[XarbcorylinaCFBP1159_C15901790, XarbcorylinaCFBP2565_C56500005]: Speciation, Mapping --> 100 m7 = LCA[XarbpruniIVIA26261_P26100467, XarbcorylinaCFBP2565_C56500005]: Speciation, Mapping --> 25 XarbzantedeschiaeCFBP7410_Z41002683: Leaf Node m6 = LCA[XarbpruniIVIA26261_P26100467, XarbzantedeschiaeCFBP7410_Z41002683]: Speciation, Mapping --> 25 XarbjuglandisCPBF426_J42602378: Leaf Node m5 = LCA[XarbpruniIVIA26261_P26100467, XarbjuglandisCPBF426_J42602378]: Transfer, Mapping --> 25, Recipient --> XarbjuglandisCPBF426 XarbfragariaeLMG19145_F14500614: Leaf Node m4 = LCA[XarbpruniIVIA26261_P26100467, XarbfragariaeLMG19145_F14500614]: Transfer, Mapping --> 25, Recipient --> XarbfragariaeLMG19145 XarbjuglandisCPBF367_J36702312: Leaf Node XarbcelebensisNCPPB1630_C63004002: Leaf Node XarbpopuliCFBP3122_P12201659: Leaf Node m54 = LCA[XarbcelebensisNCPPB1630_C63004002, XarbpopuliCFBP3122_P12201659]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbpopuliCFBP3122 m52 = LCA[XarbjuglandisCPBF367_J36702312, XarbpopuliCFBP3122_P12201659]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF367 XarbfragariaeLMG19144_F14403772: Leaf Node m51 = LCA[XarbjuglandisCPBF367_J36702312, XarbfragariaeLMG19144_F14403772]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144 m3 = LCA[XarbpruniIVIA26261_P26100467, XarbfragariaeLMG19144_F14403772]: Speciation, Mapping --> 25 XarbguizotiaeCFBP7409_G40902359: Leaf Node XarbguizotiaeCFBP7408_G40801571: Leaf Node m58 = LCA[XarbguizotiaeCFBP7409_G40902359, XarbguizotiaeCFBP7408_G40801571]: Speciation, Mapping --> 100 m2 = LCA[XarbpruniIVIA26261_P26100467, XarbguizotiaeCFBP7408_G40801571]: Speciation, Mapping --> 100 Xarb30043004_X00401289: Leaf Node m1 = LCA[XarbpruniIVIA26261_P26100467, Xarb30043004_X00401289]: Speciation, Mapping --> n2 The minimum reconciliation cost is: 67 (Duplications: 0, Transfers: 19, Losses: 10) Total number of optimal solutions: 832 Total number of candidates for gene birth: 1