------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: ((((((((((((((XarbfragariaeCFBP6762_F76200758,XarbfragariaeCFBP6773_F77300690)m14,((XarbguizotiaeCFBP7408_G40803821,XarbguizotiaeCFBP7409_G40903906)m18,(XarbjuglandisCPBF367_J36701576,XarbjuglandisCPBF426_J42602619)m21)m17)m13,((XarbzantedeschiaeCFBP7410_Z41000442,Xarb30043004_X00400475)m25,XarbfragariaeLMG19145_F14501169)m24)m12,XarbarracaciaeCFBP7407_A40700010)m11,XarbcelebensisNCPPB1630_C63003222)m10,(XarbpopuliCFBP3123_P12301765,XarbpopuliCFBP3122_P12203632)m31)m9,XarbjuglandisCFBP7179_J17903894)m8,(((XarbfragariaeLMG19144_F14401739,XarbcelebensisNCPPB1832_C83201380)m37,((((((((XarbcorylinaCFBP1159_C15901526,((XarbjuglandisCPBF427_J42700432,XarbjuglandisCPBF1521_J52102396)m50,XarbjuglandisXaj417_J41700602)m49)m47,XarbjuglandisJ303_J30303263)m46,XarbjuglandisCFBP8253_J25303908)m45,XarbcorylinaNCCB100457_C45701458)m44,XarbcorylinaCFBP2565_C56504147)m43,XarbpruniCFBP3894_P89404016)m42,XarbpruniIVIA26261_P26102772)m41,XarbfragariaeLMG19146_F14603181)m40)m36,XarbjuglandisCFBP2528_J52800454)m35)m7,(XarbjuglandisDW3F3_J3F300469,XarbjuglandisNCPPB1447_J44700369)m62)m6,XgardineriSM40611_X61100193)m5,(((XarbguizotiaeCFBP7409_G40903243,XarbguizotiaeCFBP7408_G40803576)m68,XgardineriSM40611_X61101983)m67,XgardineriSM40611_X61101074)m66)m4,((((((XarbguizotiaeCFBP7408_G40804080,XarbarracaciaeCFBP7407_A40701197)m78,XarbjuglandisXaj417_J41702082)m77,XarbcorylinaCFBP1159_C15904098)m76,XarbjuglandisNCPPB1447_J44702111)m75,XarbpopuliCFBP3122_P12200440)m74,XarbjuglandisCPBF367_J36703883)m73)m3,XarbpruniIVIA26261_P26101015)m2,XarbpruniCFBP3894_P89402700)m1; Reconciliation: XarbfragariaeCFBP6762_F76200758: Leaf Node XarbfragariaeCFBP6773_F77300690: Leaf Node m14 = LCA[XarbfragariaeCFBP6762_F76200758, XarbfragariaeCFBP6773_F77300690]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbfragariaeCFBP6773 XarbguizotiaeCFBP7408_G40803821: Leaf Node XarbguizotiaeCFBP7409_G40903906: Leaf Node m18 = LCA[XarbguizotiaeCFBP7408_G40803821, XarbguizotiaeCFBP7409_G40903906]: Speciation, Mapping --> 100 XarbjuglandisCPBF367_J36701576: Leaf Node XarbjuglandisCPBF426_J42602619: Leaf Node m21 = LCA[XarbjuglandisCPBF367_J36701576, XarbjuglandisCPBF426_J42602619]: Speciation, Mapping --> 100 m17 = LCA[XarbguizotiaeCFBP7408_G40803821, XarbjuglandisCPBF426_J42602619]: Speciation, Mapping --> 100 m13 = LCA[XarbfragariaeCFBP6762_F76200758, XarbjuglandisCPBF426_J42602619]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6762 XarbzantedeschiaeCFBP7410_Z41000442: Leaf Node Xarb30043004_X00400475: Leaf Node m25 = LCA[XarbzantedeschiaeCFBP7410_Z41000442, Xarb30043004_X00400475]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> Xarb30043004 XarbfragariaeLMG19145_F14501169: Leaf Node m24 = LCA[XarbzantedeschiaeCFBP7410_Z41000442, XarbfragariaeLMG19145_F14501169]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbfragariaeLMG19145 m12 = LCA[XarbfragariaeCFBP6762_F76200758, XarbfragariaeLMG19145_F14501169]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> 100 XarbarracaciaeCFBP7407_A40700010: Leaf Node m11 = LCA[XarbfragariaeCFBP6762_F76200758, XarbarracaciaeCFBP7407_A40700010]: Speciation, Mapping --> 25 XarbcelebensisNCPPB1630_C63003222: Leaf Node m10 = LCA[XarbfragariaeCFBP6762_F76200758, XarbcelebensisNCPPB1630_C63003222]: Speciation, Mapping --> 25 XarbpopuliCFBP3123_P12301765: Leaf Node XarbpopuliCFBP3122_P12203632: Leaf Node m31 = LCA[XarbpopuliCFBP3123_P12301765, XarbpopuliCFBP3122_P12203632]: Speciation, Mapping --> 100 m9 = LCA[XarbfragariaeCFBP6762_F76200758, XarbpopuliCFBP3122_P12203632]: Transfer, Mapping --> 100, Recipient --> 25 XarbjuglandisCFBP7179_J17903894: Leaf Node m8 = LCA[XarbfragariaeCFBP6762_F76200758, XarbjuglandisCFBP7179_J17903894]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> 100 XarbfragariaeLMG19144_F14401739: Leaf Node XarbcelebensisNCPPB1832_C83201380: Leaf Node m37 = LCA[XarbfragariaeLMG19144_F14401739, XarbcelebensisNCPPB1832_C83201380]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19144 XarbcorylinaCFBP1159_C15901526: Leaf Node XarbjuglandisCPBF427_J42700432: Leaf Node XarbjuglandisCPBF1521_J52102396: Leaf Node m50 = LCA[XarbjuglandisCPBF427_J42700432, XarbjuglandisCPBF1521_J52102396]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41700602: Leaf Node m49 = LCA[XarbjuglandisCPBF427_J42700432, XarbjuglandisXaj417_J41700602]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 m47 = LCA[XarbcorylinaCFBP1159_C15901526, XarbjuglandisXaj417_J41700602]: Transfer, Mapping --> 100, Recipient --> XarbcorylinaCFBP1159 XarbjuglandisJ303_J30303263: Leaf Node m46 = LCA[XarbcorylinaCFBP1159_C15901526, XarbjuglandisJ303_J30303263]: Speciation, Mapping --> 100 XarbjuglandisCFBP8253_J25303908: Leaf Node m45 = LCA[XarbcorylinaCFBP1159_C15901526, XarbjuglandisCFBP8253_J25303908]: Speciation, Mapping --> 100 XarbcorylinaNCCB100457_C45701458: Leaf Node m44 = LCA[XarbcorylinaCFBP1159_C15901526, XarbcorylinaNCCB100457_C45701458]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> 100 XarbcorylinaCFBP2565_C56504147: Leaf Node m43 = LCA[XarbcorylinaCFBP1159_C15901526, XarbcorylinaCFBP2565_C56504147]: Speciation, Mapping --> 100 XarbpruniCFBP3894_P89404016: Leaf Node m42 = LCA[XarbcorylinaCFBP1159_C15901526, XarbpruniCFBP3894_P89404016]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> 100 XarbpruniIVIA26261_P26102772: Leaf Node m41 = LCA[XarbcorylinaCFBP1159_C15901526, XarbpruniIVIA26261_P26102772]: Speciation, Mapping --> 100 XarbfragariaeLMG19146_F14603181: Leaf Node m40 = LCA[XarbcorylinaCFBP1159_C15901526, XarbfragariaeLMG19146_F14603181]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100 m36 = LCA[XarbfragariaeLMG19144_F14401739, XarbfragariaeLMG19146_F14603181]: Speciation, Mapping --> 100 XarbjuglandisCFBP2528_J52800454: Leaf Node m35 = LCA[XarbfragariaeLMG19144_F14401739, XarbjuglandisCFBP2528_J52800454]: Transfer, Mapping --> 100, Recipient --> 100 m7 = LCA[XarbfragariaeCFBP6762_F76200758, XarbjuglandisCFBP2528_J52800454]: Speciation, Mapping --> 100 XarbjuglandisDW3F3_J3F300469: Leaf Node XarbjuglandisNCPPB1447_J44700369: Leaf Node m62 = LCA[XarbjuglandisDW3F3_J3F300469, XarbjuglandisNCPPB1447_J44700369]: Transfer, Mapping --> XarbjuglandisDW3F3, Recipient --> XarbjuglandisNCPPB1447 m6 = LCA[XarbfragariaeCFBP6762_F76200758, XarbjuglandisNCPPB1447_J44700369]: Speciation, Mapping --> 100 XgardineriSM40611_X61100193: Leaf Node m5 = LCA[XarbfragariaeCFBP6762_F76200758, XgardineriSM40611_X61100193]: Transfer, Mapping --> XgardineriSM40611, Recipient --> 100 XarbguizotiaeCFBP7409_G40903243: Leaf Node XarbguizotiaeCFBP7408_G40803576: Leaf Node m68 = LCA[XarbguizotiaeCFBP7409_G40903243, XarbguizotiaeCFBP7408_G40803576]: Speciation, Mapping --> 100 XgardineriSM40611_X61101983: Leaf Node m67 = LCA[XarbguizotiaeCFBP7409_G40903243, XgardineriSM40611_X61101983]: Transfer, Mapping --> XgardineriSM40611, Recipient --> 100 XgardineriSM40611_X61101074: Leaf Node m66 = LCA[XarbguizotiaeCFBP7409_G40903243, XgardineriSM40611_X61101074]: Duplication, Mapping --> XgardineriSM40611 m4 = LCA[XarbfragariaeCFBP6762_F76200758, XgardineriSM40611_X61101074]: Duplication, Mapping --> XgardineriSM40611 XarbguizotiaeCFBP7408_G40804080: Leaf Node XarbarracaciaeCFBP7407_A40701197: Leaf Node m78 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbarracaciaeCFBP7407_A40701197]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> XarbarracaciaeCFBP7407 XarbjuglandisXaj417_J41702082: Leaf Node m77 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbjuglandisXaj417_J41702082]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbguizotiaeCFBP7408 XarbcorylinaCFBP1159_C15904098: Leaf Node m76 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbcorylinaCFBP1159_C15904098]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XarbjuglandisXaj417 XarbjuglandisNCPPB1447_J44702111: Leaf Node m75 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbjuglandisNCPPB1447_J44702111]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbcorylinaCFBP1159 XarbpopuliCFBP3122_P12200440: Leaf Node m74 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbpopuliCFBP3122_P12200440]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbpopuliCFBP3122 XarbjuglandisCPBF367_J36703883: Leaf Node m73 = LCA[XarbguizotiaeCFBP7408_G40804080, XarbjuglandisCPBF367_J36703883]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisNCPPB1447 m3 = LCA[XarbfragariaeCFBP6762_F76200758, XarbjuglandisCPBF367_J36703883]: Speciation, Mapping --> 78 XarbpruniIVIA26261_P26101015: Leaf Node m2 = LCA[XarbfragariaeCFBP6762_F76200758, XarbpruniIVIA26261_P26101015]: Transfer, Mapping --> XarbpruniIVIA26261, Recipient --> 78 XarbpruniCFBP3894_P89402700: Leaf Node m1 = LCA[XarbfragariaeCFBP6762_F76200758, XarbpruniCFBP3894_P89402700]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 83 (Duplications: 2, Transfers: 24, Losses: 7) Total number of optimal solutions: 512 Total number of candidates for gene birth: 1