------------ Reconciliation for Gene Tree 1 (rooted) -------------
Species Tree: 
(XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1;

Gene Tree: 
((((((((((((((((XarbjuglandisXaj417_J41702392,((XarbjuglandisNCPPB1447_J44701341,((XarbjuglandisCFBP2528_J52802836,((XarbpruniCFBP3894_P89400177,Xarb30043004_X00402848)m25,(XarbpruniIVIA26261_P26100336,XarbfragariaeCFBP6762_F76200466)m28)m24)m22,XarbjuglandisCPBF1521_J52101032)m21)m19,XarbjuglandisCPBF427_J42702193)m18)m16,XarbjuglandisDW3F3_J3F303066)m15,XarbjuglandisJ303_J30300635)m14,XarbjuglandisCFBP8253_J25300477)m13,XarbfragariaeCFBP6773_F77303239)m12,XarbfragariaeLMG19146_F14602987)m11,XarbfragariaeLMG19145_F14503953)m10,XarbfragariaeLMG19144_F14401546)m9,XarbcelebensisNCPPB1832_C83201188)m8,XarbcelebensisNCPPB1630_C63003412)m7,XarbcorylinaCFBP2565_C56501098)m6,XarbcorylinaNCCB100457_C45702647)m5,(((XarbpopuliCFBP3122_P12201991,XarbpopuliCFBP3123_P12302097)m46,XgardineriSM40611_X61100526)m45,XarbzantedeschiaeCFBP7410_Z41000198)m44)m4,XarbcorylinaCFBP1159_C15903867)m3,(((XarbjuglandisCPBF367_J36701387,XarbjuglandisCPBF426_J42601799)m54,XarbjuglandisCFBP7179_J17902344)m53,(XarbguizotiaeCFBP7409_G40902668,XarbguizotiaeCFBP7408_G40802522)m58)m52)m2,XarbarracaciaeCFBP7407_A40703482)m1;

Reconciliation:
XarbjuglandisXaj417_J41702392: Leaf Node
XarbjuglandisNCPPB1447_J44701341: Leaf Node
XarbjuglandisCFBP2528_J52802836: Leaf Node
XarbpruniCFBP3894_P89400177: Leaf Node
Xarb30043004_X00402848: Leaf Node
m25 = LCA[XarbpruniCFBP3894_P89400177, Xarb30043004_X00402848]: Transfer, Mapping --> XarbpruniCFBP3894, Recipient --> Xarb30043004
XarbpruniIVIA26261_P26100336: Leaf Node
XarbfragariaeCFBP6762_F76200466: Leaf Node
m28 = LCA[XarbpruniIVIA26261_P26100336, XarbfragariaeCFBP6762_F76200466]: Transfer, Mapping --> XarbpruniIVIA26261, Recipient --> XarbfragariaeCFBP6762
m24 = LCA[XarbpruniCFBP3894_P89400177, XarbfragariaeCFBP6762_F76200466]: Speciation, Mapping --> 100
m22 = LCA[XarbjuglandisCFBP2528_J52802836, XarbfragariaeCFBP6762_F76200466]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> 100
XarbjuglandisCPBF1521_J52101032: Leaf Node
m21 = LCA[XarbjuglandisCFBP2528_J52802836, XarbjuglandisCPBF1521_J52101032]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbjuglandisCFBP2528
m19 = LCA[XarbjuglandisNCPPB1447_J44701341, XarbjuglandisCPBF1521_J52101032]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbjuglandisNCPPB1447
XarbjuglandisCPBF427_J42702193: Leaf Node
m18 = LCA[XarbjuglandisNCPPB1447_J44701341, XarbjuglandisCPBF427_J42702193]: Speciation, Mapping --> 100
m16 = LCA[XarbjuglandisXaj417_J41702392, XarbjuglandisCPBF427_J42702193]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417
XarbjuglandisDW3F3_J3F303066: Leaf Node
m15 = LCA[XarbjuglandisXaj417_J41702392, XarbjuglandisDW3F3_J3F303066]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3
XarbjuglandisJ303_J30300635: Leaf Node
m14 = LCA[XarbjuglandisXaj417_J41702392, XarbjuglandisJ303_J30300635]: Speciation, Mapping --> 100
XarbjuglandisCFBP8253_J25300477: Leaf Node
m13 = LCA[XarbjuglandisXaj417_J41702392, XarbjuglandisCFBP8253_J25300477]: Speciation, Mapping --> 100
XarbfragariaeCFBP6773_F77303239: Leaf Node
m12 = LCA[XarbjuglandisXaj417_J41702392, XarbfragariaeCFBP6773_F77303239]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6773
XarbfragariaeLMG19146_F14602987: Leaf Node
m11 = LCA[XarbjuglandisXaj417_J41702392, XarbfragariaeLMG19146_F14602987]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100
XarbfragariaeLMG19145_F14503953: Leaf Node
m10 = LCA[XarbjuglandisXaj417_J41702392, XarbfragariaeLMG19145_F14503953]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeLMG19145
XarbfragariaeLMG19144_F14401546: Leaf Node
m9 = LCA[XarbjuglandisXaj417_J41702392, XarbfragariaeLMG19144_F14401546]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> XarbfragariaeLMG19144
XarbcelebensisNCPPB1832_C83201188: Leaf Node
m8 = LCA[XarbjuglandisXaj417_J41702392, XarbcelebensisNCPPB1832_C83201188]: Speciation, Mapping --> 100
XarbcelebensisNCPPB1630_C63003412: Leaf Node
m7 = LCA[XarbjuglandisXaj417_J41702392, XarbcelebensisNCPPB1630_C63003412]: Speciation, Mapping --> 100
XarbcorylinaCFBP2565_C56501098: Leaf Node
m6 = LCA[XarbjuglandisXaj417_J41702392, XarbcorylinaCFBP2565_C56501098]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> 100
XarbcorylinaNCCB100457_C45702647: Leaf Node
m5 = LCA[XarbjuglandisXaj417_J41702392, XarbcorylinaNCCB100457_C45702647]: Speciation, Mapping --> 100
XarbpopuliCFBP3122_P12201991: Leaf Node
XarbpopuliCFBP3123_P12302097: Leaf Node
m46 = LCA[XarbpopuliCFBP3122_P12201991, XarbpopuliCFBP3123_P12302097]: Speciation, Mapping --> 100
XgardineriSM40611_X61100526: Leaf Node
m45 = LCA[XarbpopuliCFBP3122_P12201991, XgardineriSM40611_X61100526]: Speciation, Mapping --> 100
XarbzantedeschiaeCFBP7410_Z41000198: Leaf Node
m44 = LCA[XarbpopuliCFBP3122_P12201991, XarbzantedeschiaeCFBP7410_Z41000198]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> 100
m4 = LCA[XarbjuglandisXaj417_J41702392, XarbzantedeschiaeCFBP7410_Z41000198]: Transfer, Mapping --> 100, Recipient --> XarbzantedeschiaeCFBP7410
XarbcorylinaCFBP1159_C15903867: Leaf Node
m3 = LCA[XarbjuglandisXaj417_J41702392, XarbcorylinaCFBP1159_C15903867]: Speciation, Mapping --> 100
XarbjuglandisCPBF367_J36701387: Leaf Node
XarbjuglandisCPBF426_J42601799: Leaf Node
m54 = LCA[XarbjuglandisCPBF367_J36701387, XarbjuglandisCPBF426_J42601799]: Speciation, Mapping --> 100
XarbjuglandisCFBP7179_J17902344: Leaf Node
m53 = LCA[XarbjuglandisCPBF367_J36701387, XarbjuglandisCFBP7179_J17902344]: Transfer, Mapping --> 78, Recipient --> XarbjuglandisCFBP7179
XarbguizotiaeCFBP7409_G40902668: Leaf Node
XarbguizotiaeCFBP7408_G40802522: Leaf Node
m58 = LCA[XarbguizotiaeCFBP7409_G40902668, XarbguizotiaeCFBP7408_G40802522]: Speciation, Mapping --> 100
m52 = LCA[XarbjuglandisCPBF367_J36701387, XarbguizotiaeCFBP7408_G40802522]: Speciation, Mapping --> 100
m2 = LCA[XarbjuglandisXaj417_J41702392, XarbguizotiaeCFBP7408_G40802522]: Transfer, Mapping --> 100, Recipient --> 100
XarbarracaciaeCFBP7407_A40703482: Leaf Node
m1 = LCA[XarbjuglandisXaj417_J41702392, XarbarracaciaeCFBP7407_A40703482]: Transfer, Mapping --> 100, Recipient --> XarbarracaciaeCFBP7407

The minimum reconciliation cost is: 55 (Duplications: 0, Transfers: 17, Losses: 4)
Total number of optimal solutions: 132
Total number of candidates for gene birth: 5