------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (Xarb30043004,((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((((((((XarbcorylinaCFBP2565_C56504194,XarbcorylinaCFBP1159_C15902303)m24,XarbjuglandisCFBP8253_J25303251)m23,XarbjuglandisDW3F3_J3F301813)m22,XarbjuglandisJ303_J30300735)m21,(XarbjuglandisCPBF1521_J52102717,XarbjuglandisCPBF427_J42701575)m30)m20,XarbpopuliCFBP3123_P12303741)m19,(XarbcorylinaNCCB100457_C45702089,XarbjuglandisXaj417_J41703704)m34)m18,((XarbjuglandisCFBP7179_J17902473,XarbjuglandisNCPPB1447_J44703119)m38,XarbjuglandisCFBP2528_J52801399)m37)m17,XarbpopuliCFBP3123_P12303959)m16,(XarbcorylinaCFBP2565_C56504195,XarbjuglandisCFBP8253_J25303250)m43)m15,XarbcorylinaCFBP1159_C15902302)m14,XarbjuglandisDW3F3_J3F301811)m13,XarbcelebensisNCPPB1832_C83202995)m12,XarbjuglandisCFBP7179_J17900866)m11,XarbjuglandisNCPPB1447_J44702104)m10,XarbjuglandisCFBP2528_J52801404)m9,XarbpopuliCFBP3123_P12303963)m8,((XarbjuglandisCFBP7179_J17904358,XarbjuglandisNCPPB1447_J44704120)m54,XarbcelebensisNCPPB1832_C83202999)m53)m7,XarbpopuliCFBP3123_P12303964)m6,(XarbjuglandisCPBF427_J42702024,(XarbjuglandisCPBF1521_J52102968,XarbjuglandisJ303_J30300497)m61)m59)m5,XarbcorylinaCFBP2565_C56502797)m4,((((XarbjuglandisCFBP2528_J52801402,XarbjuglandisCFBP7179_J17902471)m68,XarbjuglandisNCPPB1447_J44703118)m67,XarbcelebensisNCPPB1832_C83202994)m66,(XarbjuglandisCFBP7179_J17902472,XarbjuglandisCFBP2528_J52801400)m73)m65)m3,XarbguizotiaeCFBP7408_G40804110)m2,XarbpopuliCFBP3123_P12303961)m1; Reconciliation: XarbcorylinaCFBP2565_C56504194: Leaf Node XarbcorylinaCFBP1159_C15902303: Leaf Node m24 = LCA[XarbcorylinaCFBP2565_C56504194, XarbcorylinaCFBP1159_C15902303]: Speciation, Mapping --> 100 XarbjuglandisCFBP8253_J25303251: Leaf Node m23 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP8253_J25303251]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> 100 XarbjuglandisDW3F3_J3F301813: Leaf Node m22 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisDW3F3_J3F301813]: Transfer, Mapping --> XarbjuglandisCFBP8253, Recipient --> XarbjuglandisDW3F3 XarbjuglandisJ303_J30300735: Leaf Node m21 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisJ303_J30300735]: Transfer, Mapping --> XarbjuglandisJ303, Recipient --> XarbjuglandisCFBP8253 XarbjuglandisCPBF1521_J52102717: Leaf Node XarbjuglandisCPBF427_J42701575: Leaf Node m30 = LCA[XarbjuglandisCPBF1521_J52102717, XarbjuglandisCPBF427_J42701575]: Speciation, Mapping --> 100 m20 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCPBF427_J42701575]: Speciation, Mapping --> 100 XarbpopuliCFBP3123_P12303741: Leaf Node m19 = LCA[XarbcorylinaCFBP2565_C56504194, XarbpopuliCFBP3123_P12303741]: Transfer, Mapping --> 100, Recipient --> XarbpopuliCFBP3123 XarbcorylinaNCCB100457_C45702089: Leaf Node XarbjuglandisXaj417_J41703704: Leaf Node m34 = LCA[XarbcorylinaNCCB100457_C45702089, XarbjuglandisXaj417_J41703704]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbjuglandisXaj417 m18 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisXaj417_J41703704]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> 100 XarbjuglandisCFBP7179_J17902473: Leaf Node XarbjuglandisNCPPB1447_J44703119: Leaf Node m38 = LCA[XarbjuglandisCFBP7179_J17902473, XarbjuglandisNCPPB1447_J44703119]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbjuglandisCFBP7179 XarbjuglandisCFBP2528_J52801399: Leaf Node m37 = LCA[XarbjuglandisCFBP7179_J17902473, XarbjuglandisCFBP2528_J52801399]: Speciation, Mapping --> 100 m17 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP2528_J52801399]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> 100 XarbpopuliCFBP3123_P12303959: Leaf Node m16 = LCA[XarbcorylinaCFBP2565_C56504194, XarbpopuliCFBP3123_P12303959]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbpopuliCFBP3123 XarbcorylinaCFBP2565_C56504195: Leaf Node XarbjuglandisCFBP8253_J25303250: Leaf Node m43 = LCA[XarbcorylinaCFBP2565_C56504195, XarbjuglandisCFBP8253_J25303250]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> XarbjuglandisCFBP8253 m15 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP8253_J25303250]: Speciation, Mapping --> 100 XarbcorylinaCFBP1159_C15902302: Leaf Node m14 = LCA[XarbcorylinaCFBP2565_C56504194, XarbcorylinaCFBP1159_C15902302]: Speciation, Mapping --> 100 XarbjuglandisDW3F3_J3F301811: Leaf Node m13 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisDW3F3_J3F301811]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 XarbcelebensisNCPPB1832_C83202995: Leaf Node m12 = LCA[XarbcorylinaCFBP2565_C56504194, XarbcelebensisNCPPB1832_C83202995]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> 100 XarbjuglandisCFBP7179_J17900866: Leaf Node m11 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP7179_J17900866]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbcelebensisNCPPB1832 XarbjuglandisNCPPB1447_J44702104: Leaf Node m10 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisNCPPB1447_J44702104]: Transfer, Mapping --> XarbjuglandisNCPPB1447, Recipient --> XarbjuglandisCFBP7179 XarbjuglandisCFBP2528_J52801404: Leaf Node m9 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP2528_J52801404]: Speciation, Mapping --> 100 XarbpopuliCFBP3123_P12303963: Leaf Node m8 = LCA[XarbcorylinaCFBP2565_C56504194, XarbpopuliCFBP3123_P12303963]: Transfer, Mapping --> 100, Recipient --> XarbpopuliCFBP3123 XarbjuglandisCFBP7179_J17904358: Leaf Node XarbjuglandisNCPPB1447_J44704120: Leaf Node m54 = LCA[XarbjuglandisCFBP7179_J17904358, XarbjuglandisNCPPB1447_J44704120]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisNCPPB1447 XarbcelebensisNCPPB1832_C83202999: Leaf Node m53 = LCA[XarbjuglandisCFBP7179_J17904358, XarbcelebensisNCPPB1832_C83202999]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbcelebensisNCPPB1832 m7 = LCA[XarbcorylinaCFBP2565_C56504194, XarbcelebensisNCPPB1832_C83202999]: Speciation, Mapping --> 100 XarbpopuliCFBP3123_P12303964: Leaf Node m6 = LCA[XarbcorylinaCFBP2565_C56504194, XarbpopuliCFBP3123_P12303964]: Transfer, Mapping --> 100, Recipient --> XarbpopuliCFBP3123 XarbjuglandisCPBF427_J42702024: Leaf Node XarbjuglandisCPBF1521_J52102968: Leaf Node XarbjuglandisJ303_J30300497: Leaf Node m61 = LCA[XarbjuglandisCPBF1521_J52102968, XarbjuglandisJ303_J30300497]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbjuglandisJ303 m59 = LCA[XarbjuglandisCPBF427_J42702024, XarbjuglandisJ303_J30300497]: Speciation, Mapping --> 100 m5 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisJ303_J30300497]: Transfer, Mapping --> 100, Recipient --> 100 XarbcorylinaCFBP2565_C56502797: Leaf Node m4 = LCA[XarbcorylinaCFBP2565_C56504194, XarbcorylinaCFBP2565_C56502797]: Transfer, Mapping --> 100, Recipient --> XarbcorylinaCFBP2565 XarbjuglandisCFBP2528_J52801402: Leaf Node XarbjuglandisCFBP7179_J17902471: Leaf Node m68 = LCA[XarbjuglandisCFBP2528_J52801402, XarbjuglandisCFBP7179_J17902471]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCFBP7179 XarbjuglandisNCPPB1447_J44703118: Leaf Node m67 = LCA[XarbjuglandisCFBP2528_J52801402, XarbjuglandisNCPPB1447_J44703118]: Speciation, Mapping --> 100 XarbcelebensisNCPPB1832_C83202994: Leaf Node m66 = LCA[XarbjuglandisCFBP2528_J52801402, XarbcelebensisNCPPB1832_C83202994]: Transfer, Mapping --> 100, Recipient --> XarbcelebensisNCPPB1832 XarbjuglandisCFBP7179_J17902472: Leaf Node XarbjuglandisCFBP2528_J52801400: Leaf Node m73 = LCA[XarbjuglandisCFBP7179_J17902472, XarbjuglandisCFBP2528_J52801400]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisCFBP2528 m65 = LCA[XarbjuglandisCFBP2528_J52801402, XarbjuglandisCFBP2528_J52801400]: Speciation, Mapping --> 100 m3 = LCA[XarbcorylinaCFBP2565_C56504194, XarbjuglandisCFBP2528_J52801400]: Duplication, Mapping --> 100 XarbguizotiaeCFBP7408_G40804110: Leaf Node m2 = LCA[XarbcorylinaCFBP2565_C56504194, XarbguizotiaeCFBP7408_G40804110]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 100 XarbpopuliCFBP3123_P12303961: Leaf Node m1 = LCA[XarbcorylinaCFBP2565_C56504194, XarbpopuliCFBP3123_P12303961]: Transfer, Mapping --> XarbpopuliCFBP3123, Recipient --> XarbguizotiaeCFBP7408 The minimum reconciliation cost is: 81 (Duplications: 1, Transfers: 26, Losses: 1) Total number of optimal solutions: 720 Total number of candidates for gene birth: 4