------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((XarbjuglandisCFBP8253_J25302946,Xarb30043004_X00401062)m18,XarbfragariaeLMG19145_F14500569)m17,(((XgardineriSM40611_X61102494,XarbjuglandisCPBF426_J42602330)m24,(XarbjuglandisCPBF367_J36703703,XarbpopuliCFBP3122_P12201603)m27)m23,XarbarracaciaeCFBP7407_A40701726)m22)m16,(XarbjuglandisCPBF426_J42601137,Xarb30043004_X00402842)m31)m15,XarbjuglandisNCPPB1447_J44703887)m14,XgardineriSM40611_X61101392)m13,(XarbcelebensisNCPPB1630_C63001324,(XarbfragariaeLMG19144_F14401388,XarbfragariaeLMG19145_F14501639)m38)m36)m12,XgardineriSM40611_X61102709)m11,(XarbpruniIVIA26261_P26102931,XarbpruniCFBP3894_P89404197)m42)m10,XarbpopuliCFBP3123_P12303911)m9,XarbzantedeschiaeCFBP7410_Z41001435)m8,((XarbcelebensisNCPPB1832_C83203086,XarbcelebensisNCPPB1630_C63000435)m48,XarbfragariaeLMG19146_F14602306)m47)m7,XarbjuglandisCPBF367_J36700340)m6,XarbfragariaeLMG19145_F14502638)m5,(((Xarb30043004_X00401148,(XarbfragariaeLMG19144_F14401145,XarbcorylinaCFBP2565_C56504132)m58)m56,(XarbcorylinaNCCB100457_C45701362,XarbfragariaeCFBP6773_F77301421)m61)m55,XarbjuglandisXaj417_J41702100)m54)m4,XarbfragariaeLMG19144_F14402980)m3,(((XarbfragariaeLMG19145_F14501640,(XarbcorylinaCFBP2565_C56502995,XarbjuglandisCPBF426_J42601140)m70)m68,XarbfragariaeLMG19144_F14400227)m67,XarbjuglandisCPBF426_J42600826)m66)m2,XarbarracaciaeCFBP7407_A40704299)m1; Reconciliation: XarbjuglandisCFBP8253_J25302946: Leaf Node Xarb30043004_X00401062: Leaf Node m18 = LCA[XarbjuglandisCFBP8253_J25302946, Xarb30043004_X00401062]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisCFBP8253 XarbfragariaeLMG19145_F14500569: Leaf Node m17 = LCA[XarbjuglandisCFBP8253_J25302946, XarbfragariaeLMG19145_F14500569]: Speciation, Mapping --> n2 XgardineriSM40611_X61102494: Leaf Node XarbjuglandisCPBF426_J42602330: Leaf Node m24 = LCA[XgardineriSM40611_X61102494, XarbjuglandisCPBF426_J42602330]: Speciation, Mapping --> 78 XarbjuglandisCPBF367_J36703703: Leaf Node XarbpopuliCFBP3122_P12201603: Leaf Node m27 = LCA[XarbjuglandisCPBF367_J36703703, XarbpopuliCFBP3122_P12201603]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> XarbjuglandisCPBF367 m23 = LCA[XgardineriSM40611_X61102494, XarbpopuliCFBP3122_P12201603]: Speciation, Mapping --> 100 XarbarracaciaeCFBP7407_A40701726: Leaf Node m22 = LCA[XgardineriSM40611_X61102494, XarbarracaciaeCFBP7407_A40701726]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> 100 m16 = LCA[XarbjuglandisCFBP8253_J25302946, XarbarracaciaeCFBP7407_A40701726]: Transfer, Mapping --> n2, Recipient --> XarbarracaciaeCFBP7407 XarbjuglandisCPBF426_J42601137: Leaf Node Xarb30043004_X00402842: Leaf Node m31 = LCA[XarbjuglandisCPBF426_J42601137, Xarb30043004_X00402842]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> Xarb30043004 m15 = LCA[XarbjuglandisCFBP8253_J25302946, Xarb30043004_X00402842]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> n2 XarbjuglandisNCPPB1447_J44703887: Leaf Node m14 = LCA[XarbjuglandisCFBP8253_J25302946, XarbjuglandisNCPPB1447_J44703887]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbjuglandisNCPPB1447 XgardineriSM40611_X61101392: Leaf Node m13 = LCA[XarbjuglandisCFBP8253_J25302946, XgardineriSM40611_X61101392]: Speciation, Mapping --> 78 XarbcelebensisNCPPB1630_C63001324: Leaf Node XarbfragariaeLMG19144_F14401388: Leaf Node XarbfragariaeLMG19145_F14501639: Leaf Node m38 = LCA[XarbfragariaeLMG19144_F14401388, XarbfragariaeLMG19145_F14501639]: Transfer, Mapping --> XarbfragariaeLMG19144, Recipient --> XarbfragariaeLMG19145 m36 = LCA[XarbcelebensisNCPPB1630_C63001324, XarbfragariaeLMG19145_F14501639]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbfragariaeLMG19144 m12 = LCA[XarbjuglandisCFBP8253_J25302946, XarbfragariaeLMG19145_F14501639]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> 78 XgardineriSM40611_X61102709: Leaf Node m11 = LCA[XarbjuglandisCFBP8253_J25302946, XgardineriSM40611_X61102709]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XgardineriSM40611 XarbpruniIVIA26261_P26102931: Leaf Node XarbpruniCFBP3894_P89404197: Leaf Node m42 = LCA[XarbpruniIVIA26261_P26102931, XarbpruniCFBP3894_P89404197]: Speciation, Mapping --> 100 m10 = LCA[XarbjuglandisCFBP8253_J25302946, XarbpruniCFBP3894_P89404197]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> 100 XarbpopuliCFBP3123_P12303911: Leaf Node m9 = LCA[XarbjuglandisCFBP8253_J25302946, XarbpopuliCFBP3123_P12303911]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbpopuliCFBP3123 XarbzantedeschiaeCFBP7410_Z41001435: Leaf Node m8 = LCA[XarbjuglandisCFBP8253_J25302946, XarbzantedeschiaeCFBP7410_Z41001435]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> XarbzantedeschiaeCFBP7410 XarbcelebensisNCPPB1832_C83203086: Leaf Node XarbcelebensisNCPPB1630_C63000435: Leaf Node m48 = LCA[XarbcelebensisNCPPB1832_C83203086, XarbcelebensisNCPPB1630_C63000435]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbcelebensisNCPPB1630 XarbfragariaeLMG19146_F14602306: Leaf Node m47 = LCA[XarbcelebensisNCPPB1832_C83203086, XarbfragariaeLMG19146_F14602306]: Speciation, Mapping --> 100 m7 = LCA[XarbjuglandisCFBP8253_J25302946, XarbfragariaeLMG19146_F14602306]: Speciation, Mapping --> 100 XarbjuglandisCPBF367_J36700340: Leaf Node m6 = LCA[XarbjuglandisCFBP8253_J25302946, XarbjuglandisCPBF367_J36700340]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> 100 XarbfragariaeLMG19145_F14502638: Leaf Node m5 = LCA[XarbjuglandisCFBP8253_J25302946, XarbfragariaeLMG19145_F14502638]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbfragariaeLMG19145 Xarb30043004_X00401148: Leaf Node XarbfragariaeLMG19144_F14401145: Leaf Node XarbcorylinaCFBP2565_C56504132: Leaf Node m58 = LCA[XarbfragariaeLMG19144_F14401145, XarbcorylinaCFBP2565_C56504132]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> XarbfragariaeLMG19144 m56 = LCA[Xarb30043004_X00401148, XarbcorylinaCFBP2565_C56504132]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> Xarb30043004 XarbcorylinaNCCB100457_C45701362: Leaf Node XarbfragariaeCFBP6773_F77301421: Leaf Node m61 = LCA[XarbcorylinaNCCB100457_C45701362, XarbfragariaeCFBP6773_F77301421]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbfragariaeCFBP6773 m55 = LCA[Xarb30043004_X00401148, XarbfragariaeCFBP6773_F77301421]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41702100: Leaf Node m54 = LCA[Xarb30043004_X00401148, XarbjuglandisXaj417_J41702100]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 m4 = LCA[XarbjuglandisCFBP8253_J25302946, XarbjuglandisXaj417_J41702100]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> 100 XarbfragariaeLMG19144_F14402980: Leaf Node m3 = LCA[XarbjuglandisCFBP8253_J25302946, XarbfragariaeLMG19144_F14402980]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbfragariaeLMG19144 XarbfragariaeLMG19145_F14501640: Leaf Node XarbcorylinaCFBP2565_C56502995: Leaf Node XarbjuglandisCPBF426_J42601140: Leaf Node m70 = LCA[XarbcorylinaCFBP2565_C56502995, XarbjuglandisCPBF426_J42601140]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbcorylinaCFBP2565 m68 = LCA[XarbfragariaeLMG19145_F14501640, XarbjuglandisCPBF426_J42601140]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbfragariaeLMG19145 XarbfragariaeLMG19144_F14400227: Leaf Node m67 = LCA[XarbfragariaeLMG19145_F14501640, XarbfragariaeLMG19144_F14400227]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbfragariaeLMG19144 XarbjuglandisCPBF426_J42600826: Leaf Node m66 = LCA[XarbfragariaeLMG19145_F14501640, XarbjuglandisCPBF426_J42600826]: Duplication, Mapping --> XarbjuglandisCPBF426 m2 = LCA[XarbjuglandisCFBP8253_J25302946, XarbjuglandisCPBF426_J42600826]: Speciation, Mapping --> 100 XarbarracaciaeCFBP7407_A40704299: Leaf Node m1 = LCA[XarbjuglandisCFBP8253_J25302946, XarbarracaciaeCFBP7407_A40704299]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> 100 The minimum reconciliation cost is: 86 (Duplications: 1, Transfers: 27, Losses: 3) Total number of optimal solutions: 232 Total number of candidates for gene birth: 2