------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: ((((((((((((((((((XarbzantedeschiaeCFBP7410_Z41003867,XarbfragariaeLMG19145_F14501776)m18,XarbfragariaeCFBP6773_F77300958)m17,(XarbfragariaeLMG19144_F14401938,Xarb30043004_X00403807)m22)m16,XarbpruniCFBP3894_P89401183)m15,XarbjuglandisCFBP2528_J52801902)m14,XarbjuglandisNCPPB1447_J44700147)m13,XarbjuglandisCPBF426_J42603678)m12,XarbjuglandisDW3F3_J3F301298)m11,XarbjuglandisJ303_J30301833)m10,XarbjuglandisCFBP7179_J17900361)m9,XarbguizotiaeCFBP7408_G40803571)m8,XarbfragariaeLMG19146_F14600410)m7,XarbcelebensisNCPPB1630_C63003585)m6,XarbcorylinaNCCB100457_C45703661)m5,XarbpopuliCFBP3123_P12301105)m4,XarbcorylinaCFBP1159_C15901071)m3,((((((((((XgardineriSM40611_X61101988,(XarbpruniIVIA26261_P26102071,XarbarracaciaeCFBP7407_A40703220)m49)m47,XarbpopuliCFBP3122_P12201841)m46,XarbjuglandisCPBF1521_J52101896)m45,XarbjuglandisCPBF427_J42700761)m44,XarbjuglandisXaj417_J41701553)m43,XarbjuglandisCPBF367_J36701837)m42,XarbjuglandisCFBP8253_J25300816)m41,XarbguizotiaeCFBP7409_G40903248)m40,XarbfragariaeCFBP6762_F76202974)m39,XarbcelebensisNCPPB1832_C83203733)m38)m2,XarbcorylinaCFBP2565_C56500430)m1; Reconciliation: XarbzantedeschiaeCFBP7410_Z41003867: Leaf Node XarbfragariaeLMG19145_F14501776: Leaf Node m18 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbfragariaeLMG19145_F14501776]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> XarbzantedeschiaeCFBP7410 XarbfragariaeCFBP6773_F77300958: Leaf Node m17 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbfragariaeCFBP6773_F77300958]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19144_F14401938: Leaf Node Xarb30043004_X00403807: Leaf Node m22 = LCA[XarbfragariaeLMG19144_F14401938, Xarb30043004_X00403807]: Speciation, Mapping --> n2 m16 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, Xarb30043004_X00403807]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> n2 XarbpruniCFBP3894_P89401183: Leaf Node m15 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbpruniCFBP3894_P89401183]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> XarbpruniCFBP3894 XarbjuglandisCFBP2528_J52801902: Leaf Node m14 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisCFBP2528_J52801902]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbfragariaeLMG19145 XarbjuglandisNCPPB1447_J44700147: Leaf Node m13 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisNCPPB1447_J44700147]: Speciation, Mapping --> 100 XarbjuglandisCPBF426_J42603678: Leaf Node m12 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisCPBF426_J42603678]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF426 XarbjuglandisDW3F3_J3F301298: Leaf Node m11 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisDW3F3_J3F301298]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisDW3F3 XarbjuglandisJ303_J30301833: Leaf Node m10 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisJ303_J30301833]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisJ303 XarbjuglandisCFBP7179_J17900361: Leaf Node m9 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbjuglandisCFBP7179_J17900361]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7408_G40803571: Leaf Node m8 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbguizotiaeCFBP7408_G40803571]: Transfer, Mapping --> 100, Recipient --> XarbguizotiaeCFBP7408 XarbfragariaeLMG19146_F14600410: Leaf Node m7 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbfragariaeLMG19146_F14600410]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100 XarbcelebensisNCPPB1630_C63003585: Leaf Node m6 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbcelebensisNCPPB1630_C63003585]: Speciation, Mapping --> 100 XarbcorylinaNCCB100457_C45703661: Leaf Node m5 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbcorylinaNCCB100457_C45703661]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> 100 XarbpopuliCFBP3123_P12301105: Leaf Node m4 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbpopuliCFBP3123_P12301105]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbpopuliCFBP3123 XarbcorylinaCFBP1159_C15901071: Leaf Node m3 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbcorylinaCFBP1159_C15901071]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcorylinaCFBP1159 XgardineriSM40611_X61101988: Leaf Node XarbpruniIVIA26261_P26102071: Leaf Node XarbarracaciaeCFBP7407_A40703220: Leaf Node m49 = LCA[XarbpruniIVIA26261_P26102071, XarbarracaciaeCFBP7407_A40703220]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> XarbpruniIVIA26261 m47 = LCA[XgardineriSM40611_X61101988, XarbarracaciaeCFBP7407_A40703220]: Transfer, Mapping --> 78, Recipient --> XarbarracaciaeCFBP7407 XarbpopuliCFBP3122_P12201841: Leaf Node m46 = LCA[XgardineriSM40611_X61101988, XarbpopuliCFBP3122_P12201841]: Speciation, Mapping --> 100 XarbjuglandisCPBF1521_J52101896: Leaf Node m45 = LCA[XgardineriSM40611_X61101988, XarbjuglandisCPBF1521_J52101896]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisCPBF427_J42700761: Leaf Node m44 = LCA[XgardineriSM40611_X61101988, XarbjuglandisCPBF427_J42700761]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41701553: Leaf Node m43 = LCA[XgardineriSM40611_X61101988, XarbjuglandisXaj417_J41701553]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> 100 XarbjuglandisCPBF367_J36701837: Leaf Node m42 = LCA[XgardineriSM40611_X61101988, XarbjuglandisCPBF367_J36701837]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCPBF367 XarbjuglandisCFBP8253_J25300816: Leaf Node m41 = LCA[XgardineriSM40611_X61101988, XarbjuglandisCFBP8253_J25300816]: Speciation, Mapping --> 98 XarbguizotiaeCFBP7409_G40903248: Leaf Node m40 = LCA[XgardineriSM40611_X61101988, XarbguizotiaeCFBP7409_G40903248]: Transfer, Mapping --> 98, Recipient --> XarbguizotiaeCFBP7409 XarbfragariaeCFBP6762_F76202974: Leaf Node m39 = LCA[XgardineriSM40611_X61101988, XarbfragariaeCFBP6762_F76202974]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> 98 XarbcelebensisNCPPB1832_C83203733: Leaf Node m38 = LCA[XgardineriSM40611_X61101988, XarbcelebensisNCPPB1832_C83203733]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeCFBP6762 m2 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbcelebensisNCPPB1832_C83203733]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcelebensisNCPPB1832 XarbcorylinaCFBP2565_C56500430: Leaf Node m1 = LCA[XarbzantedeschiaeCFBP7410_Z41003867, XarbcorylinaCFBP2565_C56500430]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 70 (Duplications: 0, Transfers: 22, Losses: 4) Total number of optimal solutions: 384 Total number of candidates for gene birth: 1