------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: ((((((((((((((((XarbpruniIVIA26261_P26104241,XarbpruniCFBP3894_P89403411)m16,XarbjuglandisCFBP2528_J52804012)m15,XarbjuglandisCPBF1521_J52103839)m14,XarbjuglandisNCPPB1447_J44703374)m13,XarbjuglandisCPBF427_J42703108)m12,XarbjuglandisXaj417_J41704035)m11,XarbjuglandisJ303_J30302887)m10,XarbjuglandisCFBP7179_J17902816)m9,XarbcorylinaNCCB100457_C45700470)m8,XarbcorylinaCFBP1159_C15900579)m7,XarbcorylinaCFBP2565_C56501681)m6,(((XarbfragariaeLMG19145_F14503781,(XarbzantedeschiaeCFBP7410_Z41003031,Xarb30043004_X00400148)m33)m31,(XarbcelebensisNCPPB1630_C63002266,(XarbfragariaeLMG19146_F14603951,((XarbfragariaeLMG19144_F14400056,XarbarracaciaeCFBP7407_A40703200)m41,XarbfragariaeCFBP6773_F77300059)m40)m38)m36)m30,((XarbjuglandisCFBP8253_J25301123,XarbcelebensisNCPPB1832_C83202069)m46,XarbfragariaeCFBP6762_F76203897)m45)m29)m5,((XarbjuglandisCPBF367_J36703531,XarbjuglandisDW3F3_J3F303884)m51,XarbjuglandisCPBF426_J42600303)m50)m4,((XarbpopuliCFBP3122_P12203906,XarbpopuliCFBP3123_P12303825)m56,XgardineriSM40611_X61102643)m55)m3,XarbguizotiaeCFBP7408_G40803540)m2,XarbguizotiaeCFBP7409_G40903106)m1; Reconciliation: XarbpruniIVIA26261_P26104241: Leaf Node XarbpruniCFBP3894_P89403411: Leaf Node m16 = LCA[XarbpruniIVIA26261_P26104241, XarbpruniCFBP3894_P89403411]: Speciation, Mapping --> 100 XarbjuglandisCFBP2528_J52804012: Leaf Node m15 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisCFBP2528_J52804012]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP2528 XarbjuglandisCPBF1521_J52103839: Leaf Node m14 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisCPBF1521_J52103839]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> 100 XarbjuglandisNCPPB1447_J44703374: Leaf Node m13 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisNCPPB1447_J44703374]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbjuglandisNCPPB1447 XarbjuglandisCPBF427_J42703108: Leaf Node m12 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisCPBF427_J42703108]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41704035: Leaf Node m11 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisXaj417_J41704035]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 XarbjuglandisJ303_J30302887: Leaf Node m10 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisJ303_J30302887]: Speciation, Mapping --> 100 XarbjuglandisCFBP7179_J17902816: Leaf Node m9 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisCFBP7179_J17902816]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> 100 XarbcorylinaNCCB100457_C45700470: Leaf Node m8 = LCA[XarbpruniIVIA26261_P26104241, XarbcorylinaNCCB100457_C45700470]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbjuglandisCFBP7179 XarbcorylinaCFBP1159_C15900579: Leaf Node m7 = LCA[XarbpruniIVIA26261_P26104241, XarbcorylinaCFBP1159_C15900579]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcorylinaCFBP1159 XarbcorylinaCFBP2565_C56501681: Leaf Node m6 = LCA[XarbpruniIVIA26261_P26104241, XarbcorylinaCFBP2565_C56501681]: Speciation, Mapping --> 100 XarbfragariaeLMG19145_F14503781: Leaf Node XarbzantedeschiaeCFBP7410_Z41003031: Leaf Node Xarb30043004_X00400148: Leaf Node m33 = LCA[XarbzantedeschiaeCFBP7410_Z41003031, Xarb30043004_X00400148]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> Xarb30043004 m31 = LCA[XarbfragariaeLMG19145_F14503781, Xarb30043004_X00400148]: Transfer, Mapping --> XarbzantedeschiaeCFBP7410, Recipient --> XarbfragariaeLMG19145 XarbcelebensisNCPPB1630_C63002266: Leaf Node XarbfragariaeLMG19146_F14603951: Leaf Node XarbfragariaeLMG19144_F14400056: Leaf Node XarbarracaciaeCFBP7407_A40703200: Leaf Node m41 = LCA[XarbfragariaeLMG19144_F14400056, XarbarracaciaeCFBP7407_A40703200]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> XarbfragariaeLMG19144 XarbfragariaeCFBP6773_F77300059: Leaf Node m40 = LCA[XarbfragariaeLMG19144_F14400056, XarbfragariaeCFBP6773_F77300059]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> XarbfragariaeCFBP6773 m38 = LCA[XarbfragariaeLMG19146_F14603951, XarbfragariaeCFBP6773_F77300059]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> XarbfragariaeLMG19146 m36 = LCA[XarbcelebensisNCPPB1630_C63002266, XarbfragariaeCFBP6773_F77300059]: Transfer, Mapping --> XarbarracaciaeCFBP7407, Recipient --> XarbcelebensisNCPPB1630 m30 = LCA[XarbfragariaeLMG19145_F14503781, XarbfragariaeCFBP6773_F77300059]: Speciation, Mapping --> 25 XarbjuglandisCFBP8253_J25301123: Leaf Node XarbcelebensisNCPPB1832_C83202069: Leaf Node m46 = LCA[XarbjuglandisCFBP8253_J25301123, XarbcelebensisNCPPB1832_C83202069]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbjuglandisCFBP8253 XarbfragariaeCFBP6762_F76203897: Leaf Node m45 = LCA[XarbjuglandisCFBP8253_J25301123, XarbfragariaeCFBP6762_F76203897]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeCFBP6762 m29 = LCA[XarbfragariaeLMG19145_F14503781, XarbfragariaeCFBP6762_F76203897]: Transfer, Mapping --> 25, Recipient --> XarbcelebensisNCPPB1832 m5 = LCA[XarbpruniIVIA26261_P26104241, XarbfragariaeCFBP6762_F76203897]: Transfer, Mapping --> 100, Recipient --> 25 XarbjuglandisCPBF367_J36703531: Leaf Node XarbjuglandisDW3F3_J3F303884: Leaf Node m51 = LCA[XarbjuglandisCPBF367_J36703531, XarbjuglandisDW3F3_J3F303884]: Transfer, Mapping --> XarbjuglandisCPBF367, Recipient --> XarbjuglandisDW3F3 XarbjuglandisCPBF426_J42600303: Leaf Node m50 = LCA[XarbjuglandisCPBF367_J36703531, XarbjuglandisCPBF426_J42600303]: Speciation, Mapping --> 100 m4 = LCA[XarbpruniIVIA26261_P26104241, XarbjuglandisCPBF426_J42600303]: Transfer, Mapping --> 100, Recipient --> 100 XarbpopuliCFBP3122_P12203906: Leaf Node XarbpopuliCFBP3123_P12303825: Leaf Node m56 = LCA[XarbpopuliCFBP3122_P12203906, XarbpopuliCFBP3123_P12303825]: Speciation, Mapping --> 100 XgardineriSM40611_X61102643: Leaf Node m55 = LCA[XarbpopuliCFBP3122_P12203906, XgardineriSM40611_X61102643]: Transfer, Mapping --> XgardineriSM40611, Recipient --> 100 m3 = LCA[XarbpruniIVIA26261_P26104241, XgardineriSM40611_X61102643]: Speciation, Mapping --> 78 XarbguizotiaeCFBP7408_G40803540: Leaf Node m2 = LCA[XarbpruniIVIA26261_P26104241, XarbguizotiaeCFBP7408_G40803540]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 78 XarbguizotiaeCFBP7409_G40903106: Leaf Node m1 = LCA[XarbpruniIVIA26261_P26104241, XarbguizotiaeCFBP7409_G40903106]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 63 (Duplications: 0, Transfers: 21, Losses: 0) Total number of optimal solutions: 382 Total number of candidates for gene birth: 1