------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: (((((((((((((((XarbjuglandisCPBF1521_J52100584,XarbjuglandisCFBP7179_J17901948)m15,XarbjuglandisXaj417_J41701174)m14,((XarbjuglandisCPBF427_J42703096,XarbjuglandisCFBP8253_J25302941)m20,XarbjuglandisJ303_J30303400)m19)m13,XarbcorylinaCFBP2565_C56500057)m12,(XarbcorylinaCFBP1159_C15901738,XarbcorylinaNCCB100457_C45704039)m25)m11,XarbjuglandisCFBP2528_J52802414)m10,XarbguizotiaeCFBP7409_G40901450)m9,XarbfragariaeLMG19144_F14403722)m8,(XarbarracaciaeCFBP7407_A40703163,XgardineriSM40611_X61103031)m31)m7,XarbfragariaeCFBP6773_F77302085)m6,(((XarbfragariaeLMG19145_F14502839,XarbcelebensisNCPPB1630_C63003949)m37,(((XarbjuglandisNCPPB1447_J44701578,Xarb30043004_X00401057)m42,XarbguizotiaeCFBP7408_G40800009)m41,XarbzantedeschiaeCFBP7410_Z41002935)m40)m36,(XarbpruniIVIA26261_P26102089,XarbpruniCFBP3894_P89402419)m47)m35)m5,XarbfragariaeCFBP6762_F76202490)m4,XarbfragariaeLMG19146_F14602571)m3,((XarbpopuliCFBP3123_P12300712,(XarbpopuliCFBP3122_P12202571,XarbjuglandisDW3F3_J3F302650)m55)m53,(XarbjuglandisCPBF426_J42604030,XarbjuglandisCPBF367_J36702260)m58)m52)m2,XarbcelebensisNCPPB1832_C83203356)m1; Reconciliation: XarbjuglandisCPBF1521_J52100584: Leaf Node XarbjuglandisCFBP7179_J17901948: Leaf Node m15 = LCA[XarbjuglandisCPBF1521_J52100584, XarbjuglandisCFBP7179_J17901948]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisCPBF1521 XarbjuglandisXaj417_J41701174: Leaf Node m14 = LCA[XarbjuglandisCPBF1521_J52100584, XarbjuglandisXaj417_J41701174]: Transfer, Mapping --> 98, Recipient --> XarbjuglandisCFBP7179 XarbjuglandisCPBF427_J42703096: Leaf Node XarbjuglandisCFBP8253_J25302941: Leaf Node m20 = LCA[XarbjuglandisCPBF427_J42703096, XarbjuglandisCFBP8253_J25302941]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP8253 XarbjuglandisJ303_J30303400: Leaf Node m19 = LCA[XarbjuglandisCPBF427_J42703096, XarbjuglandisJ303_J30303400]: Speciation, Mapping --> 100 m13 = LCA[XarbjuglandisCPBF1521_J52100584, XarbjuglandisJ303_J30303400]: Speciation, Mapping --> 100 XarbcorylinaCFBP2565_C56500057: Leaf Node m12 = LCA[XarbjuglandisCPBF1521_J52100584, XarbcorylinaCFBP2565_C56500057]: Transfer, Mapping --> 100, Recipient --> 100 XarbcorylinaCFBP1159_C15901738: Leaf Node XarbcorylinaNCCB100457_C45704039: Leaf Node m25 = LCA[XarbcorylinaCFBP1159_C15901738, XarbcorylinaNCCB100457_C45704039]: Transfer, Mapping --> XarbcorylinaCFBP1159, Recipient --> XarbcorylinaNCCB100457 m11 = LCA[XarbjuglandisCPBF1521_J52100584, XarbcorylinaNCCB100457_C45704039]: Speciation, Mapping --> 100 XarbjuglandisCFBP2528_J52802414: Leaf Node m10 = LCA[XarbjuglandisCPBF1521_J52100584, XarbjuglandisCFBP2528_J52802414]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCFBP2528 XarbguizotiaeCFBP7409_G40901450: Leaf Node m9 = LCA[XarbjuglandisCPBF1521_J52100584, XarbguizotiaeCFBP7409_G40901450]: Transfer, Mapping --> 100, Recipient --> XarbguizotiaeCFBP7409 XarbfragariaeLMG19144_F14403722: Leaf Node m8 = LCA[XarbjuglandisCPBF1521_J52100584, XarbfragariaeLMG19144_F14403722]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeLMG19144 XarbarracaciaeCFBP7407_A40703163: Leaf Node XgardineriSM40611_X61103031: Leaf Node m31 = LCA[XarbarracaciaeCFBP7407_A40703163, XgardineriSM40611_X61103031]: Transfer, Mapping --> XgardineriSM40611, Recipient --> XarbarracaciaeCFBP7407 m7 = LCA[XarbjuglandisCPBF1521_J52100584, XgardineriSM40611_X61103031]: Transfer, Mapping --> 100, Recipient --> XgardineriSM40611 XarbfragariaeCFBP6773_F77302085: Leaf Node m6 = LCA[XarbjuglandisCPBF1521_J52100584, XarbfragariaeCFBP6773_F77302085]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6773 XarbfragariaeLMG19145_F14502839: Leaf Node XarbcelebensisNCPPB1630_C63003949: Leaf Node m37 = LCA[XarbfragariaeLMG19145_F14502839, XarbcelebensisNCPPB1630_C63003949]: Transfer, Mapping --> XarbfragariaeLMG19145, Recipient --> XarbcelebensisNCPPB1630 XarbjuglandisNCPPB1447_J44701578: Leaf Node Xarb30043004_X00401057: Leaf Node m42 = LCA[XarbjuglandisNCPPB1447_J44701578, Xarb30043004_X00401057]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisNCPPB1447 XarbguizotiaeCFBP7408_G40800009: Leaf Node m41 = LCA[XarbjuglandisNCPPB1447_J44701578, XarbguizotiaeCFBP7408_G40800009]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbguizotiaeCFBP7408 XarbzantedeschiaeCFBP7410_Z41002935: Leaf Node m40 = LCA[XarbjuglandisNCPPB1447_J44701578, XarbzantedeschiaeCFBP7410_Z41002935]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbzantedeschiaeCFBP7410 m36 = LCA[XarbfragariaeLMG19145_F14502839, XarbzantedeschiaeCFBP7410_Z41002935]: Speciation, Mapping --> n2 XarbpruniIVIA26261_P26102089: Leaf Node XarbpruniCFBP3894_P89402419: Leaf Node m47 = LCA[XarbpruniIVIA26261_P26102089, XarbpruniCFBP3894_P89402419]: Speciation, Mapping --> 100 m35 = LCA[XarbfragariaeLMG19145_F14502839, XarbpruniCFBP3894_P89402419]: Transfer, Mapping --> 100, Recipient --> n2 m5 = LCA[XarbjuglandisCPBF1521_J52100584, XarbpruniCFBP3894_P89402419]: Speciation, Mapping --> 100 XarbfragariaeCFBP6762_F76202490: Leaf Node m4 = LCA[XarbjuglandisCPBF1521_J52100584, XarbfragariaeCFBP6762_F76202490]: Speciation, Mapping --> 25 XarbfragariaeLMG19146_F14602571: Leaf Node m3 = LCA[XarbjuglandisCPBF1521_J52100584, XarbfragariaeLMG19146_F14602571]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 25 XarbpopuliCFBP3123_P12300712: Leaf Node XarbpopuliCFBP3122_P12202571: Leaf Node XarbjuglandisDW3F3_J3F302650: Leaf Node m55 = LCA[XarbpopuliCFBP3122_P12202571, XarbjuglandisDW3F3_J3F302650]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> XarbjuglandisDW3F3 m53 = LCA[XarbpopuliCFBP3123_P12300712, XarbjuglandisDW3F3_J3F302650]: Speciation, Mapping --> 100 XarbjuglandisCPBF426_J42604030: Leaf Node XarbjuglandisCPBF367_J36702260: Leaf Node m58 = LCA[XarbjuglandisCPBF426_J42604030, XarbjuglandisCPBF367_J36702260]: Speciation, Mapping --> 100 m52 = LCA[XarbpopuliCFBP3123_P12300712, XarbjuglandisCPBF367_J36702260]: Speciation, Mapping --> 100 m2 = LCA[XarbjuglandisCPBF1521_J52100584, XarbjuglandisCPBF367_J36702260]: Transfer, Mapping --> XarbfragariaeLMG19146, Recipient --> 100 XarbcelebensisNCPPB1832_C83203356: Leaf Node m1 = LCA[XarbjuglandisCPBF1521_J52100584, XarbcelebensisNCPPB1832_C83203356]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 62 (Duplications: 0, Transfers: 19, Losses: 5) Total number of optimal solutions: 176 Total number of candidates for gene birth: 1