------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: (XarbfragariaeLMG19145,(Xarb30043004,(XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100)n2)n1; Gene Tree: ((((((((((((((((((((((((((((((XgardineriSM40611_X61101998,XarbjuglandisCPBF367_J36700768)m30,(((((XarbjuglandisXaj417_J41703542,XarbpopuliCFBP3122_P12202110)m37,XarbpopuliCFBP3122_P12201238)m36,(XarbguizotiaeCFBP7408_G40804003,XarbguizotiaeCFBP7409_G40904059)m41)m35,(((XarbjuglandisCPBF1521_J52100678,XarbcorylinaCFBP2565_C56504303)m46,XarbjuglandisCPBF427_J42700124)m45,XarbjuglandisXaj417_J41703807)m44)m34,((XarbcelebensisNCPPB1832_C83204038,XarbfragariaeLMG19144_F14402182)m52,XarbcorylinaNCCB100457_C45704413)m51)m33)m29,((((((((((((((((((((((((((XarbjuglandisCFBP2528_J52801059,(XarbjuglandisCFBP2528_J52801569,(XarbjuglandisCFBP8253_J25304117,XarbjuglandisCFBP2528_J52802965)m85)m83)m81,XarbjuglandisCFBP2528_J52800646)m80,XarbjuglandisCFBP2528_J52800471)m79,XarbjuglandisCPBF1521_J52104067)m78,XarbjuglandisCPBF1521_J52103311)m77,XarbjuglandisCPBF1521_J52101387)m76,XarbjuglandisNCPPB1447_J44704289)m75,XarbjuglandisCPBF427_J42703511)m74,XarbjuglandisCPBF427_J42703253)m73,XarbjuglandisCPBF427_J42702564)m72,XarbjuglandisCPBF427_J42700984)m71,XarbjuglandisCPBF427_J42700609)m70,XarbjuglandisXaj417_J41703990)m69,XarbjuglandisXaj417_J41703399)m68,XarbjuglandisXaj417_J41701908)m67,XarbjuglandisXaj417_J41701646)m66,XarbjuglandisXaj417_J41701108)m65,XarbjuglandisXaj417_J41700726)m64,XarbjuglandisXaj417_J41700208)m63,XarbjuglandisXaj417_J41700030)m62,XarbjuglandisDW3F3_J3F303194)m61,XarbjuglandisDW3F3_J3F302089)m60,XarbjuglandisDW3F3_J3F300930)m59,XarbjuglandisCFBP7179_J17902469)m58,XarbjuglandisDW3F3_J3F300550)m57,XarbjuglandisJ303_J30301837)m56)m28,XarbjuglandisDW3F3_J3F300370)m27,XarbjuglandisDW3F3_J3F300909)m26,XarbjuglandisDW3F3_J3F301806)m25,XarbjuglandisDW3F3_J3F302604)m24,XarbjuglandisDW3F3_J3F303502)m23,XarbjuglandisXaj417_J41700193)m22,XarbjuglandisXaj417_J41700507)m21,XarbjuglandisXaj417_J41701083)m20,XarbjuglandisXaj417_J41701166)m19,XarbjuglandisXaj417_J41701816)m18,XarbjuglandisXaj417_J41703230)m17,XarbjuglandisXaj417_J41703870)m16,XarbjuglandisXaj417_J41704320)m15,XarbjuglandisCPBF427_J42700922)m14,XarbjuglandisCPBF427_J42701576)m13,XarbjuglandisCPBF427_J42702732)m12,XarbjuglandisCPBF427_J42703287)m11,XarbjuglandisCPBF427_J42703932)m10,XarbjuglandisCPBF1521_J52100001)m9,XarbjuglandisCPBF1521_J52101591)m8,XarbjuglandisCPBF1521_J52103750)m7,XarbjuglandisCPBF1521_J52104366)m6,XarbjuglandisCFBP2528_J52800551)m5,XarbjuglandisCFBP2528_J52800662)m4,XarbjuglandisCFBP2528_J52801128)m3,XarbjuglandisCFBP2528_J52802644)m2,XarbjuglandisCFBP2528_J52803524)m1; Reconciliation: XgardineriSM40611_X61101998: Leaf Node XarbjuglandisCPBF367_J36700768: Leaf Node m30 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF367_J36700768]: Speciation, Mapping --> 78 XarbjuglandisXaj417_J41703542: Leaf Node XarbpopuliCFBP3122_P12202110: Leaf Node m37 = LCA[XarbjuglandisXaj417_J41703542, XarbpopuliCFBP3122_P12202110]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> XarbjuglandisXaj417 XarbpopuliCFBP3122_P12201238: Leaf Node m36 = LCA[XarbjuglandisXaj417_J41703542, XarbpopuliCFBP3122_P12201238]: Duplication, Mapping --> XarbpopuliCFBP3122 XarbguizotiaeCFBP7408_G40804003: Leaf Node XarbguizotiaeCFBP7409_G40904059: Leaf Node m41 = LCA[XarbguizotiaeCFBP7408_G40804003, XarbguizotiaeCFBP7409_G40904059]: Speciation, Mapping --> 100 m35 = LCA[XarbjuglandisXaj417_J41703542, XarbguizotiaeCFBP7409_G40904059]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> 100 XarbjuglandisCPBF1521_J52100678: Leaf Node XarbcorylinaCFBP2565_C56504303: Leaf Node m46 = LCA[XarbjuglandisCPBF1521_J52100678, XarbcorylinaCFBP2565_C56504303]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbcorylinaCFBP2565 XarbjuglandisCPBF427_J42700124: Leaf Node m45 = LCA[XarbjuglandisCPBF1521_J52100678, XarbjuglandisCPBF427_J42700124]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41703807: Leaf Node m44 = LCA[XarbjuglandisCPBF1521_J52100678, XarbjuglandisXaj417_J41703807]: Speciation, Mapping --> 100 m34 = LCA[XarbjuglandisXaj417_J41703542, XarbjuglandisXaj417_J41703807]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> 100 XarbcelebensisNCPPB1832_C83204038: Leaf Node XarbfragariaeLMG19144_F14402182: Leaf Node m52 = LCA[XarbcelebensisNCPPB1832_C83204038, XarbfragariaeLMG19144_F14402182]: Transfer, Mapping --> XarbcelebensisNCPPB1832, Recipient --> XarbfragariaeLMG19144 XarbcorylinaNCCB100457_C45704413: Leaf Node m51 = LCA[XarbcelebensisNCPPB1832_C83204038, XarbcorylinaNCCB100457_C45704413]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbcelebensisNCPPB1832 m33 = LCA[XarbjuglandisXaj417_J41703542, XarbcorylinaNCCB100457_C45704413]: Transfer, Mapping --> XarbpopuliCFBP3122, Recipient --> XarbcorylinaNCCB100457 m29 = LCA[XgardineriSM40611_X61101998, XarbcorylinaNCCB100457_C45704413]: Speciation, Mapping --> 100 XarbjuglandisCFBP2528_J52801059: Leaf Node XarbjuglandisCFBP2528_J52801569: Leaf Node XarbjuglandisCFBP8253_J25304117: Leaf Node XarbjuglandisCFBP2528_J52802965: Leaf Node m85 = LCA[XarbjuglandisCFBP8253_J25304117, XarbjuglandisCFBP2528_J52802965]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCFBP8253 m83 = LCA[XarbjuglandisCFBP2528_J52801569, XarbjuglandisCFBP2528_J52802965]: Duplication, Mapping --> XarbjuglandisCFBP2528 m81 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCFBP2528_J52802965]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCFBP2528_J52800646: Leaf Node m80 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCFBP2528_J52800646]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCFBP2528_J52800471: Leaf Node m79 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCFBP2528_J52800471]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCPBF1521_J52104067: Leaf Node m78 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF1521_J52104067]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCPBF1521 XarbjuglandisCPBF1521_J52103311: Leaf Node m77 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF1521_J52103311]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCPBF1521 XarbjuglandisCPBF1521_J52101387: Leaf Node m76 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF1521_J52101387]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> XarbjuglandisCPBF1521 XarbjuglandisNCPPB1447_J44704289: Leaf Node m75 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisNCPPB1447_J44704289]: Speciation, Mapping --> 100 XarbjuglandisCPBF427_J42703511: Leaf Node m74 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF427_J42703511]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> 100 XarbjuglandisCPBF427_J42703253: Leaf Node m73 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF427_J42703253]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42702564: Leaf Node m72 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF427_J42702564]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42700984: Leaf Node m71 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF427_J42700984]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42700609: Leaf Node m70 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCPBF427_J42700609]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisXaj417_J41703990: Leaf Node m69 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41703990]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCPBF427 XarbjuglandisXaj417_J41703399: Leaf Node m68 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41703399]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701908: Leaf Node m67 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41701908]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701646: Leaf Node m66 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41701646]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701108: Leaf Node m65 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41701108]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41700726: Leaf Node m64 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41700726]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41700208: Leaf Node m63 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41700208]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41700030: Leaf Node m62 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisXaj417_J41700030]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisDW3F3_J3F303194: Leaf Node m61 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisDW3F3_J3F303194]: Transfer, Mapping --> XarbjuglandisDW3F3, Recipient --> XarbjuglandisXaj417 XarbjuglandisDW3F3_J3F302089: Leaf Node m60 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisDW3F3_J3F302089]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisDW3F3_J3F300930: Leaf Node m59 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisDW3F3_J3F300930]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisCFBP7179_J17902469: Leaf Node m58 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisCFBP7179_J17902469]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisDW3F3 XarbjuglandisDW3F3_J3F300550: Leaf Node m57 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisDW3F3_J3F300550]: Speciation, Mapping --> 100 XarbjuglandisJ303_J30301837: Leaf Node m56 = LCA[XarbjuglandisCFBP2528_J52801059, XarbjuglandisJ303_J30301837]: Speciation, Mapping --> 100 m28 = LCA[XgardineriSM40611_X61101998, XarbjuglandisJ303_J30301837]: Transfer, Mapping --> 100, Recipient --> 100 XarbjuglandisDW3F3_J3F300370: Leaf Node m27 = LCA[XgardineriSM40611_X61101998, XarbjuglandisDW3F3_J3F300370]: Transfer, Mapping --> XarbjuglandisDW3F3, Recipient --> 100 XarbjuglandisDW3F3_J3F300909: Leaf Node m26 = LCA[XgardineriSM40611_X61101998, XarbjuglandisDW3F3_J3F300909]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisDW3F3_J3F301806: Leaf Node m25 = LCA[XgardineriSM40611_X61101998, XarbjuglandisDW3F3_J3F301806]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisDW3F3_J3F302604: Leaf Node m24 = LCA[XgardineriSM40611_X61101998, XarbjuglandisDW3F3_J3F302604]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisDW3F3_J3F303502: Leaf Node m23 = LCA[XgardineriSM40611_X61101998, XarbjuglandisDW3F3_J3F303502]: Duplication, Mapping --> XarbjuglandisDW3F3 XarbjuglandisXaj417_J41700193: Leaf Node m22 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41700193]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisDW3F3 XarbjuglandisXaj417_J41700507: Leaf Node m21 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41700507]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701083: Leaf Node m20 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41701083]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701166: Leaf Node m19 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41701166]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41701816: Leaf Node m18 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41701816]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41703230: Leaf Node m17 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41703230]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41703870: Leaf Node m16 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41703870]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisXaj417_J41704320: Leaf Node m15 = LCA[XgardineriSM40611_X61101998, XarbjuglandisXaj417_J41704320]: Duplication, Mapping --> XarbjuglandisXaj417 XarbjuglandisCPBF427_J42700922: Leaf Node m14 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF427_J42700922]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> XarbjuglandisXaj417 XarbjuglandisCPBF427_J42701576: Leaf Node m13 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF427_J42701576]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42702732: Leaf Node m12 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF427_J42702732]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42703287: Leaf Node m11 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF427_J42703287]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF427_J42703932: Leaf Node m10 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF427_J42703932]: Duplication, Mapping --> XarbjuglandisCPBF427 XarbjuglandisCPBF1521_J52100001: Leaf Node m9 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF1521_J52100001]: Transfer, Mapping --> XarbjuglandisCPBF427, Recipient --> XarbjuglandisCPBF1521 XarbjuglandisCPBF1521_J52101591: Leaf Node m8 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF1521_J52101591]: Speciation, Mapping --> 100 XarbjuglandisCPBF1521_J52103750: Leaf Node m7 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF1521_J52103750]: Duplication, Mapping --> 100 XarbjuglandisCPBF1521_J52104366: Leaf Node m6 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCPBF1521_J52104366]: Duplication, Mapping --> 100 XarbjuglandisCFBP2528_J52800551: Leaf Node m5 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCFBP2528_J52800551]: Transfer, Mapping --> XarbjuglandisCFBP2528, Recipient --> 100 XarbjuglandisCFBP2528_J52800662: Leaf Node m4 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCFBP2528_J52800662]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCFBP2528_J52801128: Leaf Node m3 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCFBP2528_J52801128]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCFBP2528_J52802644: Leaf Node m2 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCFBP2528_J52802644]: Duplication, Mapping --> XarbjuglandisCFBP2528 XarbjuglandisCFBP2528_J52803524: Leaf Node m1 = LCA[XgardineriSM40611_X61101998, XarbjuglandisCFBP2528_J52803524]: Duplication, Mapping --> XarbjuglandisCFBP2528 The minimum reconciliation cost is: 150 (Duplications: 39, Transfers: 21, Losses: 9) Total number of optimal solutions: 360 Total number of candidates for gene birth: 1