------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((XarbjuglandisCPBF367_J36701044,XarbjuglandisCPBF426_J42601455)m16,((((XarbpopuliCFBP3122_P12200851,XarbjuglandisCFBP2528_J52802360)m22,XarbjuglandisDW3F3_J3F302600)m21,XarbcelebensisNCPPB1630_C63001314)m20,(XarbfragariaeCFBP6762_F76200147,XarbfragariaeLMG19146_F14601724)m27)m19)m15,XarbjuglandisCFBP7179_J17901894)m14,XarbjuglandisNCPPB1447_J44702376)m13,XarbjuglandisXaj417_J41702750)m12,((XarbfragariaeLMG19145_F14501651,((((XarbpruniIVIA26261_P26103158,(Xarb30043004_X00402233,XarbarracaciaeCFBP7407_A40702850)m41)m39,XarbjuglandisCPBF427_J42701191)m38,XarbjuglandisCFBP8253_J25300984)m37,XarbguizotiaeCFBP7408_G40802797)m36)m34,XarbcelebensisNCPPB1832_C83200855)m33)m11,XarbcorylinaNCCB100457_C45703109)m10,XarbfragariaeLMG19144_F14401378)m9,XarbfragariaeCFBP6773_F77301431)m8,XarbguizotiaeCFBP7409_G40902272)m7,XarbjuglandisJ303_J30304002)m6,XarbjuglandisCPBF1521_J52102547)m5,XarbpruniCFBP3894_P89403825)m4,(XarbcorylinaCFBP2565_C56502895,XarbzantedeschiaeCFBP7410_Z41002615)m55)m3,(XarbpopuliCFBP3123_P12302859,XgardineriSM40611_X61102813)m58)m2,XarbcorylinaCFBP1159_C15903929)m1; Reconciliation: XarbjuglandisCPBF367_J36701044: Leaf Node XarbjuglandisCPBF426_J42601455: Leaf Node m16 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisCPBF426_J42601455]: Speciation, Mapping --> 100 XarbpopuliCFBP3122_P12200851: Leaf Node XarbjuglandisCFBP2528_J52802360: Leaf Node m22 = LCA[XarbpopuliCFBP3122_P12200851, XarbjuglandisCFBP2528_J52802360]: Transfer, Mapping --> 100, Recipient --> XarbpopuliCFBP3122 XarbjuglandisDW3F3_J3F302600: Leaf Node m21 = LCA[XarbpopuliCFBP3122_P12200851, XarbjuglandisDW3F3_J3F302600]: Speciation, Mapping --> 100 XarbcelebensisNCPPB1630_C63001314: Leaf Node m20 = LCA[XarbpopuliCFBP3122_P12200851, XarbcelebensisNCPPB1630_C63001314]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> 100 XarbfragariaeCFBP6762_F76200147: Leaf Node XarbfragariaeLMG19146_F14601724: Leaf Node m27 = LCA[XarbfragariaeCFBP6762_F76200147, XarbfragariaeLMG19146_F14601724]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6762 m19 = LCA[XarbpopuliCFBP3122_P12200851, XarbfragariaeLMG19146_F14601724]: Speciation, Mapping --> 100 m15 = LCA[XarbjuglandisCPBF367_J36701044, XarbfragariaeLMG19146_F14601724]: Transfer, Mapping --> 100, Recipient --> 100 XarbjuglandisCFBP7179_J17901894: Leaf Node m14 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisCFBP7179_J17901894]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> 100 XarbjuglandisNCPPB1447_J44702376: Leaf Node m13 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisNCPPB1447_J44702376]: Speciation, Mapping --> 100 XarbjuglandisXaj417_J41702750: Leaf Node m12 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisXaj417_J41702750]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisXaj417 XarbfragariaeLMG19145_F14501651: Leaf Node XarbpruniIVIA26261_P26103158: Leaf Node Xarb30043004_X00402233: Leaf Node XarbarracaciaeCFBP7407_A40702850: Leaf Node m41 = LCA[Xarb30043004_X00402233, XarbarracaciaeCFBP7407_A40702850]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbarracaciaeCFBP7407 m39 = LCA[XarbpruniIVIA26261_P26103158, XarbarracaciaeCFBP7407_A40702850]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbpruniIVIA26261 XarbjuglandisCPBF427_J42701191: Leaf Node m38 = LCA[XarbpruniIVIA26261_P26103158, XarbjuglandisCPBF427_J42701191]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisCPBF427 XarbjuglandisCFBP8253_J25300984: Leaf Node m37 = LCA[XarbpruniIVIA26261_P26103158, XarbjuglandisCFBP8253_J25300984]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbjuglandisCFBP8253 XarbguizotiaeCFBP7408_G40802797: Leaf Node m36 = LCA[XarbpruniIVIA26261_P26103158, XarbguizotiaeCFBP7408_G40802797]: Transfer, Mapping --> Xarb30043004, Recipient --> XarbguizotiaeCFBP7408 m34 = LCA[XarbfragariaeLMG19145_F14501651, XarbguizotiaeCFBP7408_G40802797]: Speciation, Mapping --> n2 XarbcelebensisNCPPB1832_C83200855: Leaf Node m33 = LCA[XarbfragariaeLMG19145_F14501651, XarbcelebensisNCPPB1832_C83200855]: Transfer, Mapping --> n2, Recipient --> XarbcelebensisNCPPB1832 m11 = LCA[XarbjuglandisCPBF367_J36701044, XarbcelebensisNCPPB1832_C83200855]: Transfer, Mapping --> 100, Recipient --> n2 XarbcorylinaNCCB100457_C45703109: Leaf Node m10 = LCA[XarbjuglandisCPBF367_J36701044, XarbcorylinaNCCB100457_C45703109]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> 100 XarbfragariaeLMG19144_F14401378: Leaf Node m9 = LCA[XarbjuglandisCPBF367_J36701044, XarbfragariaeLMG19144_F14401378]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbfragariaeLMG19144 XarbfragariaeCFBP6773_F77301431: Leaf Node m8 = LCA[XarbjuglandisCPBF367_J36701044, XarbfragariaeCFBP6773_F77301431]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbfragariaeCFBP6773 XarbguizotiaeCFBP7409_G40902272: Leaf Node m7 = LCA[XarbjuglandisCPBF367_J36701044, XarbguizotiaeCFBP7409_G40902272]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbguizotiaeCFBP7409 XarbjuglandisJ303_J30304002: Leaf Node m6 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisJ303_J30304002]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbjuglandisJ303 XarbjuglandisCPBF1521_J52102547: Leaf Node m5 = LCA[XarbjuglandisCPBF367_J36701044, XarbjuglandisCPBF1521_J52102547]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbjuglandisCPBF1521 XarbpruniCFBP3894_P89403825: Leaf Node m4 = LCA[XarbjuglandisCPBF367_J36701044, XarbpruniCFBP3894_P89403825]: Transfer, Mapping --> XarbcorylinaNCCB100457, Recipient --> XarbpruniCFBP3894 XarbcorylinaCFBP2565_C56502895: Leaf Node XarbzantedeschiaeCFBP7410_Z41002615: Leaf Node m55 = LCA[XarbcorylinaCFBP2565_C56502895, XarbzantedeschiaeCFBP7410_Z41002615]: Transfer, Mapping --> XarbcorylinaCFBP2565, Recipient --> XarbzantedeschiaeCFBP7410 m3 = LCA[XarbjuglandisCPBF367_J36701044, XarbzantedeschiaeCFBP7410_Z41002615]: Speciation, Mapping --> 100 XarbpopuliCFBP3123_P12302859: Leaf Node XgardineriSM40611_X61102813: Leaf Node m58 = LCA[XarbpopuliCFBP3123_P12302859, XgardineriSM40611_X61102813]: Speciation, Mapping --> 100 m2 = LCA[XarbjuglandisCPBF367_J36701044, XgardineriSM40611_X61102813]: Transfer, Mapping --> 100, Recipient --> 100 XarbcorylinaCFBP1159_C15903929: Leaf Node m1 = LCA[XarbjuglandisCPBF367_J36701044, XarbcorylinaCFBP1159_C15903929]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 72 (Duplications: 0, Transfers: 22, Losses: 6) Total number of optimal solutions: 240 Total number of candidates for gene birth: 1