------------ Reconciliation for Gene Tree 1 (rooted) ------------- Species Tree: ((XarbfragariaeLMG19144,(((((XarbpopuliCFBP3123,XarbpopuliCFBP3122)100,((XarbjuglandisCPBF367,XarbjuglandisCPBF426)100,XgardineriSM40611)78)100,(XarbguizotiaeCFBP7409,XarbguizotiaeCFBP7408)100)100,(((XarbarracaciaeCFBP7407,XarbzantedeschiaeCFBP7410)25,(XarbfragariaeCFBP6762,(((XarbcorylinaCFBP1159,(XarbcorylinaCFBP2565,XarbcorylinaNCCB100457)100)100,(XarbpruniCFBP3894,XarbpruniIVIA26261)100)100,((XarbjuglandisDW3F3,(XarbjuglandisCFBP7179,(XarbjuglandisNCPPB1447,XarbjuglandisCFBP2528)100)100)100,((XarbjuglandisJ303,(XarbjuglandisCPBF1521,XarbjuglandisCPBF427)100)100,(XarbjuglandisXaj417,XarbjuglandisCFBP8253)98)100)100)100)25)25,(XarbcelebensisNCPPB1630,(XarbcelebensisNCPPB1832,XarbfragariaeLMG19146)100)100)25)100,XarbfragariaeCFBP6773)56)100,(Xarb30043004,XarbfragariaeLMG19145)n2)n1; Gene Tree: ((((((((((((((((((((((XarbfragariaeLMG19144_F14401375,XarbjuglandisCPBF1521_J52102544)m22,XarbjuglandisJ303_J30303999)m21,XarbguizotiaeCFBP7408_G40802800)m20,XarbfragariaeLMG19145_F14501654)m19,XarbcorylinaCFBP1159_C15903932)m18,(XarbpruniCFBP3894_P89403822,XarbpruniIVIA26261_P26103161)m29)m17,XarbcorylinaNCCB100457_C45703145)m16,XarbfragariaeCFBP6773_F77301434)m15,XarbguizotiaeCFBP7409_G40902269)m14,XarbjuglandisCPBF427_J42701188)m13,Xarb30043004_X00403337)m12,(((((XarbjuglandisCFBP2528_J52802357,XarbjuglandisXaj417_J41702753)m41,XarbjuglandisCFBP8253_J25300987)m40,XarbfragariaeCFBP6762_F76200144)m39,XarbcelebensisNCPPB1832_C83200852)m38,XarbcorylinaCFBP2565_C56502898)m37)m11,(XarbpopuliCFBP3123_P12302856,XarbpopuliCFBP3122_P12200854)m48)m10,XarbarracaciaeCFBP7407_A40702847)m9,XarbcelebensisNCPPB1630_C63001311)m8,XarbfragariaeLMG19146_F14601721)m7,XarbjuglandisCFBP7179_J17901891)m6,XarbjuglandisDW3F3_J3F302597)m5,XarbjuglandisNCPPB1447_J44702379)m4,(XgardineriSM40611_X61102810,XarbjuglandisCPBF426_J42601452)m57)m3,XarbzantedeschiaeCFBP7410_Z41002612)m2,XarbjuglandisCPBF367_J36701041)m1; Reconciliation: XarbfragariaeLMG19144_F14401375: Leaf Node XarbjuglandisCPBF1521_J52102544: Leaf Node m22 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisCPBF1521_J52102544]: Transfer, Mapping --> XarbjuglandisCPBF1521, Recipient --> XarbfragariaeLMG19144 XarbjuglandisJ303_J30303999: Leaf Node m21 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisJ303_J30303999]: Speciation, Mapping --> 100 XarbguizotiaeCFBP7408_G40802800: Leaf Node m20 = LCA[XarbfragariaeLMG19144_F14401375, XarbguizotiaeCFBP7408_G40802800]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 100 XarbfragariaeLMG19145_F14501654: Leaf Node m19 = LCA[XarbfragariaeLMG19144_F14401375, XarbfragariaeLMG19145_F14501654]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> XarbfragariaeLMG19145 XarbcorylinaCFBP1159_C15903932: Leaf Node m18 = LCA[XarbfragariaeLMG19144_F14401375, XarbcorylinaCFBP1159_C15903932]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> XarbcorylinaCFBP1159 XarbpruniCFBP3894_P89403822: Leaf Node XarbpruniIVIA26261_P26103161: Leaf Node m29 = LCA[XarbpruniCFBP3894_P89403822, XarbpruniIVIA26261_P26103161]: Speciation, Mapping --> 100 m17 = LCA[XarbfragariaeLMG19144_F14401375, XarbpruniIVIA26261_P26103161]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> 100 XarbcorylinaNCCB100457_C45703145: Leaf Node m16 = LCA[XarbfragariaeLMG19144_F14401375, XarbcorylinaNCCB100457_C45703145]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> XarbcorylinaNCCB100457 XarbfragariaeCFBP6773_F77301434: Leaf Node m15 = LCA[XarbfragariaeLMG19144_F14401375, XarbfragariaeCFBP6773_F77301434]: Transfer, Mapping --> XarbguizotiaeCFBP7408, Recipient --> XarbfragariaeCFBP6773 XarbguizotiaeCFBP7409_G40902269: Leaf Node m14 = LCA[XarbfragariaeLMG19144_F14401375, XarbguizotiaeCFBP7409_G40902269]: Speciation, Mapping --> 100 XarbjuglandisCPBF427_J42701188: Leaf Node m13 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisCPBF427_J42701188]: Transfer, Mapping --> 100, Recipient --> XarbjuglandisCPBF427 Xarb30043004_X00403337: Leaf Node m12 = LCA[XarbfragariaeLMG19144_F14401375, Xarb30043004_X00403337]: Transfer, Mapping --> 100, Recipient --> Xarb30043004 XarbjuglandisCFBP2528_J52802357: Leaf Node XarbjuglandisXaj417_J41702753: Leaf Node m41 = LCA[XarbjuglandisCFBP2528_J52802357, XarbjuglandisXaj417_J41702753]: Transfer, Mapping --> XarbjuglandisXaj417, Recipient --> XarbjuglandisCFBP2528 XarbjuglandisCFBP8253_J25300987: Leaf Node m40 = LCA[XarbjuglandisCFBP2528_J52802357, XarbjuglandisCFBP8253_J25300987]: Speciation, Mapping --> 98 XarbfragariaeCFBP6762_F76200144: Leaf Node m39 = LCA[XarbjuglandisCFBP2528_J52802357, XarbfragariaeCFBP6762_F76200144]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> 98 XarbcelebensisNCPPB1832_C83200852: Leaf Node m38 = LCA[XarbjuglandisCFBP2528_J52802357, XarbcelebensisNCPPB1832_C83200852]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbcelebensisNCPPB1832 XarbcorylinaCFBP2565_C56502898: Leaf Node m37 = LCA[XarbjuglandisCFBP2528_J52802357, XarbcorylinaCFBP2565_C56502898]: Transfer, Mapping --> XarbfragariaeCFBP6762, Recipient --> XarbcorylinaCFBP2565 m11 = LCA[XarbfragariaeLMG19144_F14401375, XarbcorylinaCFBP2565_C56502898]: Transfer, Mapping --> 100, Recipient --> XarbfragariaeCFBP6762 XarbpopuliCFBP3123_P12302856: Leaf Node XarbpopuliCFBP3122_P12200854: Leaf Node m48 = LCA[XarbpopuliCFBP3123_P12302856, XarbpopuliCFBP3122_P12200854]: Speciation, Mapping --> 100 m10 = LCA[XarbfragariaeLMG19144_F14401375, XarbpopuliCFBP3122_P12200854]: Speciation, Mapping --> 100 XarbarracaciaeCFBP7407_A40702847: Leaf Node m9 = LCA[XarbfragariaeLMG19144_F14401375, XarbarracaciaeCFBP7407_A40702847]: Transfer, Mapping --> 100, Recipient --> XarbarracaciaeCFBP7407 XarbcelebensisNCPPB1630_C63001311: Leaf Node m8 = LCA[XarbfragariaeLMG19144_F14401375, XarbcelebensisNCPPB1630_C63001311]: Transfer, Mapping --> XarbcelebensisNCPPB1630, Recipient --> 100 XarbfragariaeLMG19146_F14601721: Leaf Node m7 = LCA[XarbfragariaeLMG19144_F14401375, XarbfragariaeLMG19146_F14601721]: Speciation, Mapping --> 100 XarbjuglandisCFBP7179_J17901891: Leaf Node m6 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisCFBP7179_J17901891]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> 100 XarbjuglandisDW3F3_J3F302597: Leaf Node m5 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisDW3F3_J3F302597]: Transfer, Mapping --> XarbjuglandisCFBP7179, Recipient --> XarbjuglandisDW3F3 XarbjuglandisNCPPB1447_J44702379: Leaf Node m4 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisNCPPB1447_J44702379]: Speciation, Mapping --> 100 XgardineriSM40611_X61102810: Leaf Node XarbjuglandisCPBF426_J42601452: Leaf Node m57 = LCA[XgardineriSM40611_X61102810, XarbjuglandisCPBF426_J42601452]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XgardineriSM40611 m3 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisCPBF426_J42601452]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> 100 XarbzantedeschiaeCFBP7410_Z41002612: Leaf Node m2 = LCA[XarbfragariaeLMG19144_F14401375, XarbzantedeschiaeCFBP7410_Z41002612]: Transfer, Mapping --> XarbjuglandisCPBF426, Recipient --> XarbzantedeschiaeCFBP7410 XarbjuglandisCPBF367_J36701041: Leaf Node m1 = LCA[XarbfragariaeLMG19144_F14401375, XarbjuglandisCPBF367_J36701041]: Speciation, Mapping --> 100 The minimum reconciliation cost is: 67 (Duplications: 0, Transfers: 21, Losses: 4) Total number of optimal solutions: 184 Total number of candidates for gene birth: 1