Program blastn blastp blastx tblastn tblastx Database Please choose here ======= proteins (faa) ======== all genomes Mc250 AF174 AN70 ATCC8750 AU14 BDB4 DSM30030 FDAARGOS491 GZAF1 IITR89 J481 JQ135 LK36 MB207 MOR02 MUB14 NBIB017 NBRC13111a NCIB8687 NCTC10388 P156 UBA10732 UBA11281 UBA8757 YBY ZD02 PAENACAL ======= genes (ffn) ======== all genomes Mc250 AF174 AN70 ATCC8750 AU14 BDB4 DSM30030 FDAARGOS491 GZAF1 IITR89 J481 JQ135 LK36 MB207 MOR02 MUB14 NBIB017 NBRC13111a NCIB8687 NCTC10388 P156 UBA10732 UBA11281 UBA8757 YBY ZD02 PAENACAL ======= replicons (fna) ======== all genomes Mc250 AF174 AN70 ATCC8750 AU14 BDB4 DSM30030 FDAARGOS491 GZAF1 IITR89 J481 JQ135 LK36 MB207 MOR02 MUB14 NBIB017 NBRC13111a NCIB8687 NCTC10388 P156 UBA10732 UBA11281 UBA8757 YBY ZD02 PAENACAL
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
