Program blastn blastp blastx tblastn tblastx Database ======= all genomes ======== all proteins (aa) all genes (nt) all replicons (nt) ======= proteins (faa) ======== Xarb_juglandis_Xaj417.faa Xarb_juglandis_CFBP2528.faa Xarb_juglandis_CFBP7179.faa Xarb_juglandis_CFBP8253.faa Xarb_juglandis_CPBF1521.faa Xarb_juglandis_CPBF367.faa Xarb_juglandis_CPBF426.faa Xarb_juglandis_CPBF427.faa Xarb_juglandis_DW3F3.faa Xarb_juglandis_J303.faa Xarb_juglandis_NCPPB1447.faa Xarb_3004_3004.faa Xarb_arracaciae_CFBP7407.faa Xarb_celebensis_NCPPB1630.faa Xarb_celebensis_NCPPB1832.faa Xarb_corylina_CFBP1159.faa Xarb_corylina_CFBP2565.faa Xarb_corylina_NCCB100457.faa Xarb_fragariae_CFBP6762.faa Xarb_fragariae_CFBP6773.faa Xarb_fragariae_LMG19144.faa Xarb_fragariae_LMG19145.faa Xarb_fragariae_LMG19146.faa Xarb_guizotiae_CFBP7408.faa Xarb_guizotiae_CFBP7409.faa Xarb_populi_CFBP3122.faa Xarb_populi_CFBP3123.faa Xarb_pruni_CFBP3894.faa Xarb_pruni_IVIA26261.faa Xarb_zantedeschiae_CFBP7410.faa Xgardineri_SM40611.faa ======= genes (ffn) ======== Xarb_juglandis_Xaj417.ffn Xarb_juglandis_CFBP2528.ffn Xarb_juglandis_CFBP7179.ffn Xarb_juglandis_CFBP8253.ffn Xarb_juglandis_CPBF1521.ffn Xarb_juglandis_CPBF367.ffn Xarb_juglandis_CPBF426.ffn Xarb_juglandis_CPBF427.ffn Xarb_juglandis_DW3F3.ffn Xarb_juglandis_J303.ffn Xarb_juglandis_NCPPB1447.ffn Xarb_3004_3004.ffn Xarb_arracaciae_CFBP7407.ffn Xarb_celebensis_NCPPB1630.ffn Xarb_celebensis_NCPPB1832.ffn Xarb_corylina_CFBP1159.ffn Xarb_corylina_CFBP2565.ffn Xarb_corylina_NCCB100457.ffn Xarb_fragariae_CFBP6762.ffn Xarb_fragariae_CFBP6773.ffn Xarb_fragariae_LMG19144.ffn Xarb_fragariae_LMG19145.ffn Xarb_fragariae_LMG19146.ffn Xarb_guizotiae_CFBP7408.ffn Xarb_guizotiae_CFBP7409.ffn Xarb_populi_CFBP3122.ffn Xarb_populi_CFBP3123.ffn Xarb_pruni_CFBP3894.ffn Xarb_pruni_IVIA26261.ffn Xarb_zantedeschiae_CFBP7410.ffn Xgardineri_SM40611.ffn ======= genomes (fna) ======== Xarb_juglandis_Xaj417.fna Xarb_juglandis_CFBP2528.fna Xarb_juglandis_CFBP7179.fna Xarb_juglandis_CFBP8253.fna Xarb_juglandis_CPBF1521.fna Xarb_juglandis_CPBF367.fna Xarb_juglandis_CPBF426.fna Xarb_juglandis_CPBF427.fna Xarb_juglandis_DW3F3.fna Xarb_juglandis_J303.fna Xarb_juglandis_NCPPB1447.fna Xarb_3004_3004.fna Xarb_arracaciae_CFBP7407.fna Xarb_celebensis_NCPPB1630.fna Xarb_celebensis_NCPPB1832.fna Xarb_corylina_CFBP1159.fna Xarb_corylina_CFBP2565.fna Xarb_corylina_NCCB100457.fna Xarb_fragariae_CFBP6762.fna Xarb_fragariae_CFBP6773.fna Xarb_fragariae_LMG19144.fna Xarb_fragariae_LMG19145.fna Xarb_fragariae_LMG19146.fna Xarb_guizotiae_CFBP7408.fna Xarb_guizotiae_CFBP7409.fna Xarb_populi_CFBP3122.fna Xarb_populi_CFBP3123.fna Xarb_pruni_CFBP3894.fna Xarb_pruni_IVIA26261.fna Xarb_zantedeschiae_CFBP7410.fna Xgardineri_SM40611.fna
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
