Program blastn blastp blastx tblastn tblastx Database ======= all genomes ======== all proteins (aa) all genes (nt) all replicons (nt) ======= proteins (faa) ======== --> S_ufop_01_chr S_ufop_01_p1 S_ufop_01_p2 S_ficaria_NBRC102596_chr S_fonticola_DSM4576_chr S_fonticola_GS2_chr S_fonticola_GS2_pSF001 S_fonticola_GS2_pSF002 S_liquefaciens_ATCC27592_chr S_liquefaciens_ATCC27592_p1 S_liquefaciens_FDAARGOS125_chr S_liquefaciens_HUMV21_chr S_marcences_B3R3_chr S_marcences_B3R3_p1 S_marcences_CAV1492_chr S_marcences_CAV1492_p199 S_marcences_CAV1492_p3223 S_marcences_CAV1492_p6393 S_marcences_CAV1492_p73 S_marcences_CAV1492_pKPC S_marcences_DB11_chr S_marcences_FGI94_chr S_marcences_RSC14_chr S_marcences_SM39_chr S_marcences_SM39_pSMC1 S_marcences_SM39_pSMC2 S_marcences_SmUNAM836_chr S_marcences_SmUNAM836_p1 S_marcences_WW4_chr S_marcences_WW4_pSmWW4 S_multitudinisentens_RB25_chr S_nematodiphila_DZ0503SBS1_chr S_odorifera_DSM4582_chr S_phage_ETA_chr S_phage_phiMAM1_chr S_phage_PS2_chr S_plymuthica_3Re418_chr S_plymuthica_3RP8_chr S_plymuthica_4Rx13_chr S_plymuthica_AS9_chr S_plymuthica_PRI2c_chr S_plymuthica_S13_chr S_proteamaculans_568_chr S_proteamaculans_568_pSPRO01 S_rubidaea_1122_chr S_sp_AS12_chr S_sp_AS13_chr S_sp_FS14_chr S_sp_SCBI_chr S_sp_SCBI_p1 S_sp_YD25_chr S_symbiotica_cinaracedri_chr S_symbiotica_STs_chr S_ureilytica_Lr54_chr Ecoli_K12_chr Yersinia_enterocolitica_8081_chr Yersinia_enterocolitica_8081_pYVe8081 ======= genes (ffn) ======== S_ufop_01_chr S_ufop_01_p1 S_ufop_01_p2 S_ficaria_NBRC102596_chr S_fonticola_DSM4576_chr S_fonticola_GS2_chr S_fonticola_GS2_pSF001 S_fonticola_GS2_pSF002 S_liquefaciens_ATCC27592_chr S_liquefaciens_ATCC27592_p1 S_liquefaciens_FDAARGOS125_chr S_liquefaciens_HUMV21_chr S_marcences_B3R3_chr S_marcences_B3R3_p1 S_marcences_CAV1492_chr S_marcences_CAV1492_p199 S_marcences_CAV1492_p3223 S_marcences_CAV1492_p6393 S_marcences_CAV1492_p73 S_marcences_CAV1492_pKPC S_marcences_DB11_chr S_marcences_FGI94_chr S_marcences_RSC14_chr S_marcences_SM39_chr S_marcences_SM39_pSMC1 S_marcences_SM39_pSMC2 S_marcences_SmUNAM836_chr S_marcences_SmUNAM836_p1 S_marcences_WW4_chr S_marcences_WW4_pSmWW4 S_multitudinisentens_RB25_chr S_nematodiphila_DZ0503SBS1_chr S_odorifera_DSM4582_chr S_phage_ETA_chr S_phage_phiMAM1_chr S_phage_PS2_chr S_plymuthica_3Re418_chr S_plymuthica_3RP8_chr S_plymuthica_4Rx13_chr S_plymuthica_AS9_chr S_plymuthica_PRI2c_chr S_plymuthica_S13_chr S_proteamaculans_568_chr S_proteamaculans_568_pSPRO01 S_rubidaea_1122_chr S_sp_AS12_chr S_sp_AS13_chr S_sp_FS14_chr S_sp_SCBI_chr S_sp_SCBI_p1 S_sp_YD25_chr S_symbiotica_cinaracedri_chr S_symbiotica_STs_chr S_ureilytica_Lr54_chr Ecoli_K12_chr Yersinia_enterocolitica_8081_chr Yersinia_enterocolitica_8081_pYVe8081 ======= replicons (fna) ======== S_ufop_01_chr S_ufop_01_p1 S_ufop_01_p2 S_ficaria_NBRC102596_chr S_fonticola_DSM4576_chr S_fonticola_GS2_chr S_fonticola_GS2_pSF001 S_fonticola_GS2_pSF002 S_liquefaciens_ATCC27592_chr S_liquefaciens_ATCC27592_p1 S_liquefaciens_FDAARGOS125_chr S_liquefaciens_HUMV21_chr S_marcences_B3R3_chr S_marcences_B3R3_p1 S_marcences_CAV1492_chr S_marcences_CAV1492_p199 S_marcences_CAV1492_p3223 S_marcences_CAV1492_p6393 S_marcences_CAV1492_p73 S_marcences_CAV1492_pKPC S_marcences_DB11_chr S_marcences_FGI94_chr S_marcences_RSC14_chr S_marcences_SM39_chr S_marcences_SM39_pSMC1 S_marcences_SM39_pSMC2 S_marcences_SmUNAM836_chr S_marcences_SmUNAM836_p1 S_marcences_WW4_chr S_marcences_WW4_pSmWW4 S_multitudinisentens_RB25_chr S_nematodiphila_DZ0503SBS1_chr S_odorifera_DSM4582_chr S_phage_ETA_chr S_phage_phiMAM1_chr S_phage_PS2_chr S_plymuthica_3Re418_chr S_plymuthica_3RP8_chr S_plymuthica_4Rx13_chr S_plymuthica_AS9_chr S_plymuthica_PRI2c_chr S_plymuthica_S13_chr S_proteamaculans_568_chr S_proteamaculans_568_pSPRO01 S_rubidaea_1122_chr S_sp_AS12_chr S_sp_AS13_chr S_sp_FS14_chr S_sp_SCBI_chr S_sp_SCBI_p1 S_sp_YD25_chr S_symbiotica_cinaracedri_chr S_symbiotica_STs_chr S_ureilytica_Lr54_chr Ecoli_K12_chr Yersinia_enterocolitica_8081_chr Yersinia_enterocolitica_8081_pYVe8081
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
